GS_00HPFLG.1

USA/GS_00HPFLG.1/2026-03-10
W. H. Clore & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ305367.1.seg4/PZ305368.1.seg6
Submitting group
Date submitted
2026-04-30 04:54:59 UTC
Date released
2026-04-30 04:55:41 UTC

Clade

Clade HA
D.3.1
Clade NA
D.2

Sample details

Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-03-10
Isolate name
A/swine/Iowa/A02758746/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-04-20

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1707 (97%)
Total ambiguous nucs seg4
1
Total inserted nucs seg4
6
Total SNPs seg4
113
Length seg6
1410 (98.4%)
Total SNPs seg6
25

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • G209A
  • A231C
  • A232G
  • C281A
  • C293G
  • A315G
  • C318T
  • G322A
  • C344T
  • G360A
  • G416A

seg6

  • A144G
  • G163C
  • C227T
  • A237G
  • C452A
  • A470G
  • G607A
  • C703T
  • G750A
  • A785G
  • T799C
  • A818G
  • C893T
  • G914T
  • T944C
  • T1016C
  • C1024T
  • A1049G
Deletions
N/A
Insertions

seg4

ins_530:AAAGAA

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54R
  • HA1:S74R
  • HA1:T82A
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:T120A
  • HA1:N129D
  • HA1:P137S
  • HA1:K142R
  • HA1:G155E
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P
  • HA1:S185I
  • HA1:A186T

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:N135D
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

NA

  • NA:I46V
  • NA:S52T
  • NA:R77G
  • NA:S200N
  • NA:A232V
  • NA:D248N
  • NA:I264T
  • NA:S339L
  • NA:G382E
  • NA:V453M
  • NA:K469N

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions

HA1

ins_HA1:153:KE