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Influenza A/H1N1pdm
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GS_00HPFA3.1
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Download FASTA
Download metadata TSV
USA/GS_00HPFA3.1/2026-02-26
K. Lantz &
T. Stuber
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
Submission details
Submission ID
PZ300437.1.seg1/PZ300438.1.seg2/PZ300439.1.seg3/PZ300440.1.seg4/PZ300441.1.seg5/PZ300442.1.seg6/PZ300443.1.seg7/PZ300444.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-30 04:54:59 UTC
Date released
2026-04-30 04:55:41 UTC
INSDC
bioprojectAccession
PRJNA1230736
biosampleAccession
SAMN56613407
INSDC accession seg1
PZ300437.1
INSDC accession seg2
PZ300438.1
INSDC accession seg3
PZ300439.1
INSDC accession seg4
PZ300440.1
INSDC accession seg5
PZ300441.1
INSDC accession seg6
PZ300442.1
INSDC accession seg7
PZ300443.1
INSDC accession seg8
PZ300444.1
NCBI release date
2026-04-20
SRA run accession
SRR37708635
Clade
Clade HA
D
Clade NA
C.5.1.1
Sample details
Collection country
USA
Collection subdivision level 1
MN
Collection date
2026-02-26
Isolate name
A/Turkey/MN/26G03461-001-original/2026
Host
Host
Meleagris gallopavo
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
162
Length seg2
2274 (100%)
Total SNPs seg2
187
Length seg3
2151 (100%)
Total SNPs seg3
178
Length seg4
1701 (97.1%)
Total SNPs seg4
109
Length seg5
1497 (100%)
Total SNPs seg5
49
Length seg6
1410 (98.4%)
Total SNPs seg6
27
Length seg7
982 (100%)
Total SNPs seg7
26
Length seg8
838 (97.1%)
Total SNPs seg8
61
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
G
21
A
G
99
A
A
105
T
A
117
G
G
161
A
A
177
G
A
182
G
T
201
C
G
207
A
A
219
G
A
222
G
A
240
G
A
264
T
G
267
A
T
279
C
A
288
G
G
303
A
C
309
A
Show more
seg2
T
18
C
A
33
G
A
34
G
G
42
A
A
45
G
T
81
C
A
129
C
C
147
T
A
155
G
G
156
A
A
159
G
G
162
A
G
168
A
C
174
T
T
186
G
C
201
T
C
217
T
G
225
A
Show more
seg3
A
21
G
C
27
T
R
53
A
C
82
T
A
87
G
T
96
C
T
105
C
A
120
G
T
123
C
T
132
C
T
150
C
G
170
A
G
175
C
A
183
C
C
201
T
G
204
A
C
211
T
A
213
G
Show more
seg4
G
39
A
C
42
A
A
47
G
T
56
C
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
G
213
T
A
231
C
T
236
C
C
248
T
C
255
T
G
292
A
C
293
A
T
294
G
C
318
T
Show more
seg5
A
24
G
T
30
C
A
72
G
A
78
G
T
159
A
A
300
T
T
326
C
R
341
A
T
365
A
A
441
C
G
459
A
A
486
G
A
504
G
T
543
A
A
561
G
G
568
A
A
570
G
C
591
A
Show more
seg6
C
47
T
A
156
G
C
223
T
C
275
T
T
335
C
T
353
C
C
452
A
C
569
T
C
773
T
A
785
G
A
818
G
C
893
T
G
905
T
G
914
T
G
1025
A
G
1153
A
A
1164
G
C
1187
T
Show more
seg7
C
45
A
A
87
G
C
108
T
T
114
C
C
163
T
T
168
C
A
180
G
A
252
G
T
261
C
G
270
A
G
324
A
G
333
T
G
414
T
T
501
A
A
528
G
T
642
C
C
672
T
G
679
A
Show more
seg8
C
12
T
C
15
T
A
16
G
T
51
C
G
60
A
A
63
G
C
96
T
A
114
G
T
127
C
A
129
G
A
131
T
G
133
A
G
151
A
G
152
A
T
159
C
C
192
T
G
195
T
A
198
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
A
48
S
HA1:
K
54
Q
HA1:
S
74
K
HA1:
S
75
A
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
N
129
D
HA1:
P
137
S
HA1:
N
156
Q
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
M
HA1:
A
186
T
HA1:
Q
189
E
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
K
116
E
HA2:
S
124
H
HA2:
E
172
K
HA2:
E
179
D
M1
M1:
A
227
T
M2
M2:
T
11
I
M2:
D
21
V
M2:
S
22
L
M2:
V
27
A
NA
NA:
N
50
D
NA:
T
72
I
NA:
G
382
E
NA:
K
386
E
NA:
E
432
K
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
M
6
V
NEP:
S
37
A
NEP:
V
49
I
NEP:
S
60
K
NEP:
M
83
V
NEP:
A
115
T
NP
NP:
D
53
E
NP:
I
109
T
NP:
X
114
E
NP:
L
122
Q
NP:
A
190
T
NP:
S
344
T
NP:
N
377
S
NP:
V
444
I
NP:
K
452
R
NP:
N
473
S
NS1
NS1:
M
6
V
NS1:
K
44
I
NS1:
G
45
R
NS1:
G
51
N
NS1:
E
75
D
NS1:
L
77
I
NS1:
R
78
K
NS1:
S
87
P
NS1:
S
91
A
NS1:
L
115
F
NS1:
L
119
M
NS1:
M
124
L
NS1:
V
129
I
NS1:
V
157
I
NS1:
Y
171
N
NS1:
V
178
I
NS1:
V
194
G
NS1:
I
198
L
Show more
PA
PA:
X
18
E
PA:
P
28
S
PA:
R
57
Q
PA:
E
59
Q
PA:
I
85
T
PA:
M
86
V
PA:
I
118
V
PA:
S
186
G
PA:
K
204
R
PA:
K
213
R
PA:
P
224
S
PA:
N
254
S
PA:
K
256
R
PA:
R
262
K
PA:
T
263
K
PA:
H
277
S
PA:
V
323
I
PA:
M
336
L
Show more
PA-X
PA-X:
X
18
E
PA-X:
P
28
S
PA-X:
R
57
Q
PA-X:
E
59
Q
PA-X:
I
85
T
PA-X:
M
86
V
PA-X:
I
118
V
PA-X:
S
186
G
PA-X:
S
193
N
PA-X:
K
195
R
PA-X:
L
201
S
PA-X:
N
204
D
PA-X:
R
206
K
PA-X:
L
210
P
PA-X:
A
212
V
PA-X:
S
213
G
PA-X:
P
215
Q
PA-X:
A
225
V
PA-X:
*
233
W
PB1
PB1:
I
12
V
PB1:
K
52
R
PB1:
V
113
I
PB1:
N
175
D
PB1:
L
212
M
PB1:
G
216
S
PB1:
I
298
L
PB1:
R
361
K
PB1:
I
364
L
PB1:
A
374
S
PB1:
S
384
P
PB1:
K
386
R
PB1:
D
398
E
PB1:
K
433
R
PB1:
I
435
T
PB1:
V
587
T
PB1:
D
618
E
PB1:
N
642
S
PB1:
V
728
I
PB1:
K
737
R
PB2
PB2:
R
54
K
PB2:
K
61
R
PB2:
T
105
K
PB2:
G
225
S
PB2:
A
274
S
PB2:
Q
288
K
PB2:
I
315
M
PB2:
E
391
D
PB2:
E
396
D
PB2:
S
453
T
PB2:
N
456
S
PB2:
V
560
L
PB2:
M
575
L
PB2:
V
667
I
PB2:
E
677
D
SigPep
SigPep:
V
7
I
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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