GS_00HNRXL.1

USA/GS_00HNRXL.1/2026-03-31
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ281600.1.seg3/PZ281598.1.seg4/PZ281599.1.seg8
Submitting group
Date submitted
2026-04-15 05:13:19 UTC
Date released
2026-04-15 05:13:56 UTC

INSDC

Bioproject accession
INSDC accession seg3
INSDC accession seg4
INSDC accession seg8
NCBI release date
2026-04-14

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-03-31
Isolate name
B/Washington/GKISBBBI65373/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg3
2258 (100%)
Total inserted nucs seg3
13
Total SNPs seg3
52
Length seg4
1844 (98.3%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg8
1045 (98%)
Total SNPs seg8
24

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • T111C
  • C117T
  • A195G
  • C216T
  • T339C
  • A411G
  • G414A
  • T423C
  • A525C
  • G549A
  • A618G
  • T654C
  • A665G
  • A771G
  • A789G
  • C813T
  • G867A
  • C897T

seg4

  • C111T
  • T159C
  • C210A
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T

seg8

  • G26A
  • T103C
  • A118G
  • T163C
  • G190A
  • A267G
  • T341C
  • A352C
  • A374G
  • T391C
  • C419T
  • G422A
  • T496C
  • T577C
  • C604T
  • A610T
  • C632T
  • G661A
Deletions

seg4

562-570
Insertions

seg3

ins_2241:AGAAAC, ins_2245:ATCAAAA

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

NEP

  • NEP:L30S
  • NEP:S93P

NS1

  • NS1:K79R
  • NS1:Y104H
  • NS1:K107N
  • NS1:T115A
  • NS1:L130F
  • NS1:D131N
  • NS1:H201Y

PA

  • PA:N222S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V
Deletions

HA1

HA1:162-164
Insertions
N/A