GS_00HNQP3.1

USA/GS_00HNQP3.1/2026-03-30
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ280330.1.seg1/PZ280331.1.seg2/PZ280329.1.seg3/PZ280324.1.seg4/PZ280327.1.seg5/PZ280326.1.seg6/PZ280325.1.seg7/PZ280328.1.seg8
Submitting group
Date submitted
2026-04-15 05:13:19 UTC
Date released
2026-04-15 05:13:56 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
North Dakota
Collection date
2026-03-30
Isolate name
B/North Dakota/USAFSAM-17395/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-04-14

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
46
Length seg2
2313 (98.1%)
Total SNPs seg2
57
Length seg3
2181 (97.1%)
Total SNPs seg3
54
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
58
Length seg5
1683 (96.2%)
Total SNPs seg5
32
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
36
Length seg7
1076 (93.8%)
Total SNPs seg7
16
Length seg8
1027 (96.3%)
Total SNPs seg8
18

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G158A
  • G197A
  • A200G
  • A359G
  • G383A
  • T522C
  • C746A
  • G776A
  • A827G
  • C854T
  • T938C
  • A950G
  • T962C
  • T968C
  • T995C
  • G1064A
  • G1094A

seg2

  • G12A
  • G39A
  • A54G
  • G81A
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G
  • A705G

seg3

  • T15C
  • T72C
  • T88C
  • T111C
  • C117T
  • C120T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • A708G
  • A771G
  • C813T
  • T837C
  • G867A
  • C897T
  • A935G

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • T333C
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A

seg5

  • T46C
  • A55G
  • A121G
  • C178T
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • G715T
  • A763G

seg6

  • T9C
  • C125A
  • T134C
  • T212C
  • C317T
  • A358G
  • C394T
  • C399T
  • T432C
  • G459A
  • A504G
  • C519T
  • C534T
  • A596C
  • A660C
  • T714A
  • C849T
  • T879C

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G
  • T994C

seg8

  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T355C
  • G376A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
  • G869A
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions

seg6

ins_0:ATGAACA

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:V71A
  • NA:T106I
  • NA:I120V
  • NA:N199T
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397N
  • NA:V401I
  • NA:K404R

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y
  • NS1:G280R

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:T468M
  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I346M
  • PB2:L402S
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A