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Influenza A/H1N1pdm
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GS_00HN95M.1
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Slovakia/GS_00HN95M.1/2026-02-17
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ455380.1.seg1/OZ455379.1.seg2/OZ455375.1.seg3/OZ455373.1.seg4/OZ455377.1.seg5/OZ455374.1.seg6/OZ455376.1.seg7/OZ455378.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-11 05:41:55 UTC
Date released
2026-04-11 05:42:28 UTC
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA122096030
INSDC accession seg1
OZ455380.1
INSDC accession seg2
OZ455379.1
INSDC accession seg3
OZ455375.1
INSDC accession seg4
OZ455373.1
INSDC accession seg5
OZ455377.1
INSDC accession seg6
OZ455374.1
INSDC accession seg7
OZ455376.1
INSDC accession seg8
OZ455378.1
NCBI release date
2026-04-08
SRA run accession
ERR16965634
Clade
Clade HA
D.3.1
Clade NA
D
Sample details
Collection country
Slovakia
Collection date
2026-02-17
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2276 (99.5%)
Total inserted nucs seg1
8
Total SNPs seg1
87
Length seg2
2249 (98.2%)
Total inserted nucs seg2
16
Total SNPs seg2
75
Length seg3
2159 (98.7%)
Total inserted nucs seg3
36
Total SNPs seg3
86
Length seg4
1728 (98.6%)
Total SNPs seg4
113
Length seg5
1530 (100%)
Total inserted nucs seg5
33
Total SNPs seg5
60
Length seg6
1392 (95.3%)
Total SNPs seg6
22
Total unknown nucs seg6
27
Length seg7
969 (98.7%)
Total SNPs seg7
31
Length seg8
841 (96.9%)
Total inserted nucs seg8
5
Total SNPs seg8
39
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
36
A
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
Show more
seg2
G
42
A
T
81
C
A
159
G
G
168
A
G
180
A
C
192
A
G
204
A
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
A
345
G
A
366
G
T
384
C
C
447
T
T
450
C
Show more
seg3
G
40
A
R
53
A
A
56
G
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
C
468
T
G
477
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
A
232
G
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
285
T
A
392
G
C
452
A
G
607
A
G
659
A
C
728
A
G
748
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
C
929
T
G
950
A
T
1016
C
A
1049
G
C
1187
T
A
1193
G
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
633
A
Show more
seg8
C
6
A
C
42
T
C
54
T
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
226
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
C
388
A
Show more
Deletions
N/A
Insertions
seg1
ins_2280:TGTCGAAT
seg2
ins_2274:TGAATTTAACTTGTCC
seg3
ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCC
seg5
ins_0:TAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAA
seg8
ins_0:ACATA
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
R
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
L
130
M
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
V
178
I
NS1:
N
205
S
NS1:
K
219
E
PA
PA:
V
14
I
PA:
X
18
E
PA:
K
19
R
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA:
M
561
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
K
19
R
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
D
377
N
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
A
652
V
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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