GS_00HMMDV.1

USA/GS_00HMMDV.1/2026-03-23
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ256285.1.seg1/PZ256281.1.seg4/PZ256283.1.seg6/PZ256282.1.seg7/PZ256284.1.seg8
Submitting group
Date submitted
2026-04-08 05:03:08 UTC
Date released
2026-04-08 05:03:44 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg4
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-04-07

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-03-23
Isolate name
B/Washington/GKISBBBI85214/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2357 (100%)
Total inserted nucs seg1
23
Total SNPs seg1
40
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
54
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
34
Length seg7
1172 (100%)
Total inserted nucs seg7
25
Total SNPs seg7
23
Length seg8
1083 (99.6%)
Total inserted nucs seg8
21
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C581A
  • C708T
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C
  • T968C

seg4

  • C123T
  • G144A
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T

seg6

  • T9C
  • C125A
  • C152T
  • T155C
  • T212C
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • A107G
  • T125A
  • A377G
  • T404C
  • A419G
  • G482A
  • A489G
  • G500T
  • T515A
  • G521A
  • A524G
  • G536A
  • C542T
  • A566G
  • C656T

seg8

  • G26A
  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • A384G
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTTTCTACT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TTCTTA, ins_1147:AAAAGTGCGTTGTTTCTAC

seg8

ins_1066:TAAAAATCCTCTTGTTACTAC

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:S163G

NA

  • NA:P42Q
  • NA:P51L
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:N118S
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PB1

  • PB1:V474I
Deletions

HA1

HA1:162-164
Insertions
N/A