GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
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Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
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Influenza B/Victoria
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GS_00HMLZP.1
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Download FASTA
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USA/GS_00HMLZP.1/2026-03-04
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ250649.1.seg1/PZ250650.1.seg2/PZ250651.1.seg3/PZ250652.1.seg4/PZ250653.1.seg5/PZ250654.1.seg6/PZ250655.1.seg7/PZ250656.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-08 05:03:08 UTC
Date released
2026-04-08 05:03:44 UTC
Clade
Clade HA
V1A.3a.2
Clade NA
B.7.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-03-04
Isolate name
B/California/LACPHL-INF02530/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ250649.1
INSDC accession seg2
PZ250650.1
INSDC accession seg3
PZ250651.1
INSDC accession seg4
PZ250652.1
INSDC accession seg5
PZ250653.1
INSDC accession seg6
PZ250654.1
INSDC accession seg7
PZ250655.1
INSDC accession seg8
PZ250656.1
NCBI release date
2026-04-06
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
2161 (70.3%)
Total deleted nucs seg1
102
Total SNPs seg1
25
Total unknown nucs seg1
623
Length seg2
2313 (75.6%)
Total SNPs seg2
36
Total unknown nucs seg2
531
Length seg3
2181 (97.1%)
Total SNPs seg3
46
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
48
Length seg5
1683 (96.2%)
Total SNPs seg5
30
Length seg6
1391 (99.3%)
Total SNPs seg6
37
Length seg7
1139 (99.2%)
Total ambiguous nucs seg7
1
Total SNPs seg7
21
Length seg8
1034 (97%)
Total SNPs seg8
25
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
113
T
A
200
G
T
219
C
G
251
A
G
1064
A
G
1094
A
T
1100
C
G
1133
A
A
1172
G
T
1212
C
G
1217
A
T
1308
C
A
1406
G
T
1413
C
G
1422
A
G
1622
A
T
1647
C
A
1736
G
Show more
seg2
G
12
A
A
54
G
G
81
A
T
171
C
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
T
1101
C
C
1212
T
G
1236
A
T
1425
C
G
1446
A
T
1478
C
A
1488
G
Show more
seg3
T
111
C
C
117
T
T
339
C
G
414
A
T
423
C
G
465
A
G
549
A
A
618
G
T
654
C
A
771
G
C
813
T
G
867
A
G
888
A
C
897
T
A
935
G
G
936
A
A
987
G
C
1006
T
Show more
seg4
T
159
C
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
C
375
T
C
378
T
A
427
G
C
441
T
T
444
C
C
453
T
G
457
A
G
460
A
A
463
G
A
484
G
C
509
T
T
510
C
Show more
seg5
T
46
C
C
172
T
C
178
T
A
224
G
A
235
G
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
G
435
A
A
454
G
C
523
T
C
608
T
A
634
G
T
742
C
A
763
G
C
841
T
Show more
seg6
C
125
A
T
155
C
T
212
C
C
318
A
A
358
G
C
394
T
C
399
T
C
429
T
A
504
G
C
519
T
A
557
G
A
660
C
T
714
A
G
825
A
C
849
T
T
879
C
T
885
G
C
954
T
Show more
seg7
C
33
T
C
46
T
A
83
G
T
125
A
A
377
G
A
419
G
G
482
A
G
500
T
T
515
C
G
521
A
A
524
G
G
536
A
C
542
T
A
566
G
C
656
T
G
668
A
A
919
G
C
928
T
Show more
seg8
A
118
G
T
163
C
G
190
A
T
341
C
A
352
C
T
391
C
T
400
C
T
401
C
C
419
T
A
426
G
T
451
C
C
604
T
A
610
T
C
632
T
G
652
A
G
661
A
G
685
A
G
701
A
Show more
Deletions
seg1
339-440
seg4
562-570
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
E
HA1:
M
156
V
HA1:
G
184
E
HA1:
A
199
T
HA1:
A
202
V
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
D
158
N
M1
M1:
T
15
I
NA
NA:
P
42
Q
NA:
L
52
S
NA:
V
71
A
NA:
I
120
V
NA:
K
186
R
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
I
NA:
V
401
I
NA:
M
403
T
NA:
L
455
P
NEP
NEP:
T
24
N
NEP:
L
30
S
NEP:
S
93
P
NEP:
V
115
I
NP
NP:
T
66
A
NP:
R
136
K
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
S
124
P
NS1:
L
130
F
NS1:
D
132
G
NS1:
H
201
Y
NS1:
V
224
I
NS1:
N
242
K
PA
PA:
K
312
R
PA:
T
352
A
PA:
Y
458
F
PA:
S
530
T
PA:
S
547
G
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
V
474
I
PB2
PB2:
I
492
T
PB2:
X
582
E
Deletions
HA1
HA1:162-164
PB1
PB1:112-145
Insertions
N/A
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