GS_00HMKZQ.1

USA/GS_00HMKZQ.1/2026-03-22
A. Chan

Purdue University, Molecular

Submission details

Submission ID
PZ250973.1.seg4/PZ250974.1.seg6
Submitting group
Date submitted
2026-04-08 04:30:57 UTC
Date released
2026-04-08 04:32:19 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-03-22
Isolate name
A/swine/Indiana/A018123367/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-04-06

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Alignment and QC

Length seg4
1571 (90.4%)
Total SNPs seg4
121
Length seg6
690 (47.9%)
Total SNPs seg6
9

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg4

  • G155A
  • A163G
  • C189T
  • G199A
  • C203A
  • C208T
  • G213A
  • G214A
  • G222A
  • A250G
  • A251G
  • A281G
  • T296C
  • T300C
  • C302T
  • A305G
  • A312G
  • C335A

seg6

  • A124G
  • C349A
  • G456A
  • G517A
  • T777A
  • T778A
  • A780C
  • A783G
  • G794C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

HA1

  • HA1:Q33R
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:F79L
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S
  • HA1:H156S

HA2

  • HA2:S29C
  • HA2:I32R
  • HA2:N46D
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

NA

  • NA:R150H
  • NA:I257K
  • NA:E258A
  • NA:E259G
Deletions
N/A
Insertions
N/A