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GS_00HMKXU.1
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USA/GS_00HMKXU.1/2026-03-14
P. Dykema,
N. Hanson,
Q. Yang,
D. Lucas,
S. Jr. Grimmet,
J. Johnson &
K. Waterman
Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics
Submission details
Submission ID
PZ247779.1.seg1/PZ247780.1.seg2/PZ247781.1.seg3/PZ247782.1.seg4/PZ247783.1.seg5/PZ247784.1.seg6/PZ247785.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-08 04:30:57 UTC
Date released
2026-04-08 04:32:19 UTC
INSDC
Bioproject accession
PRJNA1400571
INSDC accession seg1
PZ247779.1
INSDC accession seg2
PZ247780.1
INSDC accession seg3
PZ247781.1
INSDC accession seg4
PZ247782.1
INSDC accession seg5
PZ247783.1
INSDC accession seg6
PZ247784.1
INSDC accession seg7
PZ247785.1
NCBI release date
2026-04-06
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Washington,Spokane
Collection date
2026-03-14
Isolate name
A/WASHINGTON/WAPHL-407709/2026
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg1
2315 (98.9%)
Total SNPs seg1
103
Length seg2
2306 (98.5%)
Total SNPs seg2
112
Length seg3
2187 (97.9%)
Total SNPs seg3
91
Length seg4
1728 (99.5%)
Total SNPs seg4
125
Length seg5
1517 (96.9%)
Total SNPs seg5
57
Length seg6
1418 (98.5%)
Total SNPs seg6
19
Length seg7
975 (94.9%)
Total SNPs seg7
27
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
T
426
C
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
A
342
T
Show more
seg3
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
T
420
C
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
C
29
T
A
40
C
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
513
G
Show more
seg6
C
40
T
A
64
G
T
100
C
G
160
T
C
349
A
G
456
A
G
517
A
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
G
1202
A
G
1206
A
G
1342
A
G
1390
A
A
1410
G
T
1413
C
T
1430
G
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
G
349
A
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
C
571
A
A
637
G
A
658
G
G
680
A
C
697
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
G
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
D
88
A
NA
NA:
M
51
I
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
D
399
N
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
G
216
S
PB1:
L
218
I
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
S
592
P
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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