GS_00HKLFW.1

USA/GS_00HKLFW.1/2026-03-05
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ211521.1.seg2/PZ211512.1.seg3/PZ211467.1.seg4/PZ211477.1.seg7/PZ211502.1.seg8
Submitting group
Date submitted
2026-03-29 04:48:38 UTC
Date released
2026-03-29 04:49:13 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Kentucky
Collection date
2026-03-05
Isolate name
B/Kentucky/USAFSAM-17312/2026

Host

Host

INSDC

INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-03-27

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg2
2313 (98.1%)
Total SNPs seg2
57
Length seg3
2181 (97.1%)
Total SNPs seg3
55
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
58
Length seg7
1076 (93.8%)
Total SNPs seg7
16
Length seg8
1027 (96.3%)
Total SNPs seg8
17

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • G12A
  • G39A
  • A54G
  • G81A
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G
  • A705G

seg3

  • T15C
  • T72C
  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • A708G
  • A771G
  • C813T
  • T837C
  • G867A
  • C897T
  • A935G
  • G936A

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • C443T
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G

seg8

  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T355C
  • G376A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions
N/A

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NEP

  • NEP:L30S
  • NEP:S93P

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:T509N
  • PB2:X582E
  • PB2:V641I
Deletions

HA1

HA1:162-164
Insertions
N/A