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Influenza A/H1N1pdm
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GS_00HKL1Q.1
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USA/GS_00HKL1Q.1/2026-02-24
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ212208.1.seg3/PZ212209.1.seg4/PZ212210.1.seg5/PZ212211.1.seg6/PZ212212.1.seg7/PZ212213.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-28 04:49:58 UTC
Date released
2026-03-28 04:50:30 UTC
Clade
Clade HA
D.3.1
Clade NA
D
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-02-24
Isolate name
A/California/LACPHL-INF02465/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg3
PZ212208.1
INSDC accession seg4
PZ212209.1
INSDC accession seg5
PZ212210.1
INSDC accession seg6
PZ212211.1
INSDC accession seg7
PZ212212.1
INSDC accession seg8
PZ212213.1
NCBI release date
2026-03-27
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg3
2115 (70.8%)
Total deleted nucs seg3
36
Total SNPs seg3
63
Total unknown nucs seg3
628
Length seg4
1701 (97.1%)
Total SNPs seg4
110
Length seg5
1497 (100%)
Total SNPs seg5
59
Length seg6
1410 (98.4%)
Total SNPs seg6
25
Length seg7
982 (100%)
Total SNPs seg7
33
Length seg8
863 (100%)
Total SNPs seg8
36
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg3
G
40
A
R
53
A
A
56
G
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
C
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
C
468
T
G
477
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
43
T
C
285
T
A
392
G
T
413
C
C
452
A
A
527
G
G
607
A
G
659
A
C
728
A
G
748
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
C
929
T
G
950
A
T
1016
C
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
C
295
T
G
306
A
G
339
A
G
342
A
C
375
A
G
414
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
Show more
seg8
C
6
A
C
42
T
C
54
T
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
226
T
T
230
C
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
Show more
Deletions
seg3
712-747
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
S
12
F
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
76
S
NS1:
L
77
P
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
N
205
S
PA
PA:
V
14
I
PA:
X
18
E
PA:
K
19
R
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
K
19
R
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
PA
PA:238-249
Insertions
N/A
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