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GS_00HKKU4.1
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USA/GS_00HKKU4.1/2026-02-19
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ212196.1.seg4/PZ212197.1.seg5/PZ212198.1.seg6/PZ212199.1.seg7/PZ212200.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-28 04:49:55 UTC
Date released
2026-03-28 04:51:15 UTC
Clade
Clade HA
J.2.4
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-02-19
Isolate name
A/California/LACPHL-INF02463/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg4
PZ212196.1
INSDC accession seg5
PZ212197.1
INSDC accession seg6
PZ212198.1
INSDC accession seg7
PZ212199.1
INSDC accession seg8
PZ212200.1
NCBI release date
2026-03-27
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg4
1701 (97.8%)
Total ambiguous nucs seg4
2
Total SNPs seg4
127
Length seg5
1497 (95.5%)
Total ambiguous nucs seg5
1
Total SNPs seg5
56
Length seg6
1410 (98%)
Total SNPs seg6
18
Length seg7
982 (95.6%)
Total SNPs seg7
29
Length seg8
863 (97%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
A
24
G
T
42
A
G
56
T
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
157
G
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
G
96
A
G
207
A
C
216
T
G
219
A
C
249
T
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
513
G
T
525
C
A
582
C
A
600
G
Show more
seg6
C
20
A
A
64
G
T
100
C
C
349
A
G
456
A
G
637
A
C
797
A
G
838
A
T
1015
C
A
1044
G
T
1129
C
A
1160
G
G
1206
A
T
1240
C
T
1309
C
C
1330
T
G
1342
A
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
208
T
G
214
T
A
241
G
T
292
C
T
298
C
G
328
A
A
466
G
A
481
G
C
493
T
A
517
G
G
553
A
T
566
C
A
637
G
A
658
G
G
680
A
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
A
356
G
G
398
A
G
416
A
G
430
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
N
31
S
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
F
79
V
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
S
23
N
M2:
P
25
L
M2:
S
31
N
M2:
Y
52
H
M2:
L
54
F
M2:
N
82
S
NA
NA:
Q
5
K
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
385
D
NA:
R
400
K
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
T
215
A
NP:
R
216
G
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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