GS_00HKJXZ.1

USA/GS_00HKJXZ.1/2026-03-06
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ211370.1.seg4/PZ211409.1.seg5/PZ211398.1.seg6/PZ211384.1.seg7/PZ211422.1.seg8
Submitting group
Date submitted
2026-03-28 04:49:55 UTC
Date released
2026-03-28 04:51:15 UTC

Clade

Clade HA
J.2.4
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
Missouri
Collection date
2026-03-06
Isolate name
A/Missouri/USAFSAM-17298/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-03-27

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Alignment and QC

Length seg4
1701 (97.9%)
Total SNPs seg4
122
Length seg5
1497 (95.6%)
Total SNPs seg5
53
Length seg6
1410 (98%)
Total SNPs seg6
23
Length seg7
982 (95.6%)
Total SNPs seg7
27
Length seg8
838 (94.2%)
Total SNPs seg8
30

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg4

  • A24G
  • T42A
  • G56T
  • C72A
  • T74A
  • C77T
  • C89T
  • G155A
  • A163G
  • C189T
  • G199A
  • C203A
  • C208T
  • G213A
  • G214A
  • G222A
  • A250G
  • A251G

seg5

  • G96A
  • G207A
  • C216T
  • G219A
  • C249T
  • A345C
  • A351G
  • G390A
  • G432T
  • G436T
  • T447C
  • A451C
  • C459T
  • G492A
  • A513G
  • T525C
  • A582C
  • G606A

seg6

  • C20A
  • A64G
  • T100C
  • C141T
  • G322T
  • C349A
  • G456A
  • G633A
  • C797A
  • G838A
  • T1015C
  • A1044G
  • C1108T
  • T1121C
  • T1129C
  • C1135T
  • A1160G
  • G1206A

seg7

  • A37T
  • C188T
  • G205A
  • G208T
  • G214T
  • A241G
  • T292C
  • T298C
  • G328A
  • A466G
  • A481G
  • C493T
  • A517G
  • A637G
  • A658G
  • G680A
  • C697T
  • T703C

seg8

  • C53T
  • G83A
  • G102A
  • A104C
  • C116T
  • C123A
  • T125C
  • G192T
  • T205C
  • T218C
  • A238G
  • T271C
  • C275G
  • G353A
  • G398A
  • G416A
  • G430A
  • A442G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

HA1

  • HA1:L3I
  • HA1:Q33R
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:F79V
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:N49S
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160T
  • HA2:I193M
  • HA2:V200I

M1

  • M1:V219I

M2

  • M2:G16E
  • M2:P25L
  • M2:S31N
  • M2:L54F
  • M2:N82S

NA

  • NA:Q5K
  • NA:P45L
  • NA:R150H
  • NA:G209E
  • NA:H264N
  • NA:D346G
  • NA:N385D
  • NA:R400K
  • NA:H468R
  • NA:I469T

NP

  • NP:A131S
  • NP:I136L
  • NP:V197I
  • NP:R236K
  • NP:E421D
  • NP:T472A

NS1

  • NS1:E26N
  • NS1:L33I
  • NS1:A56S
  • NS1:V60A
  • NS1:E71G
  • NS1:V82A
  • NS1:M124I
  • NS1:S135N
  • NS1:D139G
  • NS1:I171V
  • NS1:L185F
  • NS1:K221E
  • NS1:K229E

SigPep

  • SigPep:T3A
  • SigPep:Y9N
Deletions
N/A
Insertions
N/A