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GS_00HJR5D.1
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USA/GS_00HJR5D.1/2025-12-15
R. S. Cox,
G. Goodwin,
J. Freeman,
G. Godfrey &
D. Hook
South Carolina Dept. of Public Health, South Carolina Dept. of Public Health
Submission details
Submission ID
PZ194750.1.seg4/PZ194855.1.seg5/PZ194820.1.seg6/PZ194785.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-26 04:37:20 UTC
Date released
2026-03-26 04:40:45 UTC
INSDC
Bioproject accession
PRJNA1419886
Biosample accession
SAMN56688410
INSDC accession seg4
PZ194750.1
INSDC accession seg5
PZ194855.1
INSDC accession seg6
PZ194820.1
INSDC accession seg7
PZ194785.1
NCBI release date
2026-03-25
SRA run accession
SRR37749234
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
South Carolina
Collection date
2025-12-15
Isolate name
A/South Carolina/SCPHL-FLU26-0075/2025
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
123
Length seg5
1497 (95.6%)
Total SNPs seg5
54
Length seg6
1410 (98%)
Total SNPs seg6
19
Length seg7
982 (95.6%)
Total SNPs seg7
28
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
513
G
T
525
C
A
582
C
Show more
seg6
C
40
T
A
64
G
T
100
C
C
286
A
C
349
A
G
456
A
G
496
A
G
517
A
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
G
1206
A
A
1307
G
G
1342
A
G
1390
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
521
A
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
166
I
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
T
434
A
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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