GenSpectrum
Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H1N1pdm
|
Browse data
Select organism section
Browse data
GS_00HJFE5.1
Download
Download FASTA
Download metadata TSV
USA/GS_00HJFE5.1/2026-02-07
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ178170.1.seg3/PZ178171.1.seg4/PZ178172.1.seg5/PZ178173.1.seg6/PZ178174.1.seg7/PZ178175.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-26 04:29:29 UTC
Date released
2026-03-26 04:31:00 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-02-07
Isolate name
A/California/LACPHL-INF02362/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg3
PZ178170.1
INSDC accession seg4
PZ178171.1
INSDC accession seg5
PZ178172.1
INSDC accession seg6
PZ178173.1
INSDC accession seg7
PZ178174.1
INSDC accession seg8
PZ178175.1
NCBI release date
2026-03-23
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg3
2175 (99.9%)
Frame shifts seg3
PA:53-61(nt:156-181),PA-X:53-61(nt:156-181)
Total ambiguous nucs seg3
2
Total frame shifts seg3
2
Total inserted nucs seg3
24
Total SNPs seg3
80
Length seg4
1701 (97.1%)
Total SNPs seg4
108
Length seg5
1497 (100%)
Total SNPs seg5
60
Length seg6
1410 (98.4%)
Total SNPs seg6
22
Length seg7
982 (100%)
Total SNPs seg7
31
Length seg8
863 (100%)
Total SNPs seg8
34
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg3
A
21
G
G
40
A
R
53
A
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
C
261
A
A
267
C
G
298
A
G
423
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
G
42
T
C
87
T
A
97
G
C
132
T
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
T
402
C
Show more
seg6
C
20
T
C
285
T
C
301
T
C
452
A
C
571
T
G
607
A
A
785
G
T
799
C
A
818
G
G
867
A
C
874
T
C
893
T
G
914
T
A
1049
G
C
1187
T
A
1193
G
A
1196
G
A
1208
G
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
G
345
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
G
366
T
A
367
G
A
375
T
Show more
Deletions
N/A
Insertions
seg3
ins_155:ACTTGAGGGGT, ins_181:GAAAATTGCTTCT
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
P
93
S
NA:
A
98
V
NA:
T
188
I
NA:
S
200
N
NA:
I
264
T
NA:
E
287
K
NA:
T
289
I
NA:
I
396
M
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
S
287
N
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
PA
ins_PA:51:QLEG, ins_PA:60:ENCF
PA-X
ins_PA-X:51:QLEG, ins_PA-X:60:ENCF
Load sequences