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Influenza A/H1N1pdm
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GS_00HJFD7.1
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Download FASTA
Download metadata TSV
USA/GS_00HJFD7.1/2026-01-25
K. Lantz &
T. Stuber
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
Submission details
Submission ID
PZ176112.1.seg1/PZ176113.1.seg2/PZ176114.1.seg3/PZ176115.1.seg4/PZ176116.1.seg5/PZ176117.1.seg6/PZ176118.1.seg7/PZ176119.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-26 04:29:29 UTC
Date released
2026-03-26 04:31:00 UTC
INSDC
Bioproject accession
PRJNA1207547
Biosample accession
SAMN55722728
INSDC accession seg1
PZ176112.1
INSDC accession seg2
PZ176113.1
INSDC accession seg3
PZ176114.1
INSDC accession seg4
PZ176115.1
INSDC accession seg5
PZ176116.1
INSDC accession seg6
PZ176117.1
INSDC accession seg7
PZ176118.1
INSDC accession seg8
PZ176119.1
NCBI release date
2026-03-20
SRA run accession
SRR37292579
Clade
Clade NA
A
Sample details
Collection country
USA
Collection subdivision level 1
CO
Collection date
2026-01-25
Isolate name
A/Mallard Duck/CO/26G02060-002-original/2026
Host
Host
Anas platyrhynchos
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
271
Length seg2
2274 (100%)
Total SNPs seg2
318
Length seg3
2151 (100%)
Total SNPs seg3
285
Length seg5
1497 (100%)
Total SNPs seg5
260
Length seg6
1410 (98.4%)
Total deleted nucs seg6
9
Total inserted nucs seg6
9
Total SNPs seg6
228
Length seg7
982 (100%)
Total SNPs seg7
87
Length seg8
838 (97.1%)
Total SNPs seg8
131
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
G
21
A
G
36
A
T
48
C
C
60
A
T
63
C
G
75
T
T
81
C
C
93
A
A
105
C
A
138
G
G
144
A
G
161
A
C
165
T
T
171
C
A
184
C
C
195
A
T
201
C
A
204
T
Show more
seg2
C
19
T
C
28
T
A
30
G
A
34
G
A
63
G
T
69
G
T
75
C
C
114
T
A
129
T
C
141
T
C
147
T
G
156
A
A
159
G
G
162
A
G
168
A
A
175
T
G
180
A
T
186
A
Show more
seg3
C
9
T
R
53
A
G
84
A
A
93
G
T
96
A
G
102
A
T
123
C
A
129
G
T
132
G
G
147
A
C
162
T
C
165
T
G
171
A
T
186
C
A
189
G
T
198
C
C
201
T
G
204
A
Show more
seg5
A
27
C
G
42
A
G
54
A
G
61
A
A
69
T
A
81
G
C
87
T
A
97
G
T
102
C
C
123
A
A
126
G
A
138
G
C
141
T
T
159
A
A
162
G
C
163
A
A
165
G
A
168
G
Show more
seg6
C
20
T
C
35
T
T
38
C
T
41
G
T
44
A
T
50
C
A
54
G
C
55
T
A
56
G
T
78
C
C
116
T
T
127
C
T
134
C
A
137
G
G
139
A
G
143
C
A
144
C
T
145
C
Show more
seg7
T
36
C
A
43
G
G
75
A
G
84
T
A
88
G
G
89
A
C
93
G
A
102
G
G
105
A
A
111
C
T
123
G
T
154
C
A
174
G
A
252
T
C
267
T
G
270
A
T
282
C
T
291
C
Show more
seg8
C
6
T
C
15
T
A
16
G
T
39
C
C
42
T
A
52
G
G
60
A
A
73
C
T
75
A
G
77
A
T
79
C
T
102
C
G
105
A
C
108
T
T
117
C
A
120
G
T
127
C
A
131
G
Show more
Deletions
seg6
64-72
Insertions
seg6
ins_77:AGTCTGGTG
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
M1
M1:
I
15
V
M1:
S
30
D
M1:
K
101
R
M1:
S
116
A
M1:
A
142
V
M1:
A
166
V
M1:
N
207
S
M1:
T
209
A
M1:
H
214
Q
M2
M2:
S
13
N
M2:
E
14
G
M2:
R
18
K
M2:
N
31
S
M2:
T
43
L
M2:
F
48
S
M2:
F
55
L
M2:
Q
77
R
NA
NA:
T
16
V
NA:
T
19
I
NA:
A
20
I
NA:
N
21
S
NA:
I
23
V
NA:
I
40
T
NA:
S
44
N
NA:
Q
45
H
NA:
I
46
P
NA:
K
51
Q
NA:
F
66
Y
NA:
V
67
I
NA:
S
74
L
NA:
A
75
I
NA:
R
77
E
NA:
S
79
A
NA:
A
81
D
NA:
S
82
P
Show more
NEP
NEP:
M
6
V
NEP:
V
32
I
NEP:
R
34
Q
NEP:
T
48
A
NEP:
Y
57
S
NEP:
E
63
G
NEP:
G
70
S
NEP:
M
83
V
NEP:
A
89
V
NEP:
A
115
T
NP
NP:
D
21
N
NP:
I
33
V
NP:
D
53
E
NP:
V
100
R
NP:
X
114
E
NP:
V
119
I
NP:
L
122
Q
NP:
I
136
L
NP:
I
189
M
NP:
A
190
V
NP:
V
217
I
NP:
H
289
Y
NP:
K
305
R
NP:
V
313
F
NP:
M
316
I
NP:
K
350
T
NP:
K
351
R
NP:
I
353
V
Show more
NS1
NS1:
M
6
V
NS1:
I
18
V
NS1:
N
25
Q
NS1:
G
26
E
NS1:
K
44
R
NS1:
N
48
S
NS1:
L
59
R
NS1:
V
60
A
NS1:
W
67
R
NS1:
K
70
E
NS1:
S
74
D
NS1:
T
76
A
NS1:
R
78
K
NS1:
T
86
A
NS1:
S
91
T
NS1:
R
108
K
NS1:
I
111
V
NS1:
I
112
A
Show more
PA
PA:
X
18
E
PA:
I
85
T
PA:
E
101
G
PA:
S
186
G
PA:
K
204
R
PA:
K
213
R
PA:
P
224
S
PA:
K
256
R
PA:
R
262
K
PA:
D
272
E
PA:
L
275
P
PA:
H
277
S
PA:
M
336
L
PA:
R
356
K
PA:
R
362
K
PA:
D
382
E
PA:
G
388
S
PA:
K
391
R
Show more
PA-X
PA-X:
X
18
E
PA-X:
I
85
T
PA-X:
E
101
G
PA-X:
S
186
G
PA-X:
K
195
R
PA-X:
N
204
D
PA-X:
R
206
K
PA-X:
E
209
G
PA-X:
L
210
P
PA-X:
S
213
G
PA-X:
L
214
S
PA-X:
*
233
W
PB1
PB1:
I
12
V
PB1:
T
59
S
PB1:
N
175
D
PB1:
I
179
M
PB1:
G
216
S
PB1:
I
298
L
PB1:
I
336
V
PB1:
M
339
I
PB1:
R
361
S
PB1:
I
364
L
PB1:
K
386
R
PB1:
K
430
R
PB1:
I
435
T
PB1:
V
463
I
PB1:
K
486
R
PB1:
V
517
I
PB1:
D
581
E
PB1:
Q
584
R
Show more
PB2
PB2:
R
54
K
PB2:
D
65
E
PB2:
T
147
I
PB2:
A
184
T
PB2:
K
187
R
PB2:
G
225
S
PB2:
A
271
T
PB2:
V
292
I
PB2:
I
315
M
PB2:
K
340
R
PB2:
S
453
P
PB2:
I
559
T
PB2:
T
588
A
PB2:
S
590
G
PB2:
R
591
Q
PB2:
L
645
M
PB2:
S
684
A
Deletions
N/A
Insertions
N/A
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