GS_00HJF5P.1

USA/GS_00HJF5P.1/2026-02-20
A. USDA Swine Influenza Surveillance & M. Sturos

USDA

Submission details

Submission ID
PZ169098.1.seg4/PZ169099.1.seg6
Submitting group
Date submitted
2026-03-26 04:29:29 UTC
Date released
2026-03-26 04:31:00 UTC

Clade

Clade HA
unassigned

Sample details

Collection country
USA
Collection date
2026-02-20
Isolate name
A/swine/Minnesota/A02978940/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-03-19

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg4
1701 (96.9%)
Total ambiguous nucs seg4
3
Total SNPs seg4
182

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • T41C
  • G57A
  • C61A
  • C62A
  • A71C
  • A86C
  • G98A
  • A110T
  • A131G
  • T161C
  • G174A
  • A178G
  • C185T
  • G188A
  • C215T
  • T224C
  • A238G
  • C248A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:D35N
  • HA1:K36R
  • HA1:N56S
  • HA1:I61L
  • HA1:S74R
  • HA1:P83S
  • HA1:S84K
  • HA1:D86E
  • HA1:D97N
  • HA1:S128T
  • HA1:A141T
  • HA1:K142N
  • HA1:K146R
  • HA1:I149V
  • HA1:K153Q
  • HA1:L161I
  • HA1:S162N
  • HA1:G170E

HA2

  • HA2:V18I
  • HA2:E47G
  • HA2:N71S
  • HA2:K75R
  • HA2:N114D
  • HA2:N117T
  • HA2:S124R
  • HA2:N146D
  • HA2:T147M
  • HA2:V152I
  • HA2:A166S
  • HA2:I183V
  • HA2:V200I

SigPep

  • SigPep:A13T
  • SigPep:T14K
Deletions
N/A
Insertions
N/A