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Influenza A/H1N1pdm
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Browse data
GS_00HH4RV.1
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Download FASTA
Download metadata TSV
USA/GS_00HH4RV.1/2026-02-22
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. Plocik &
D. Gratalo
Ginkgo Biosecurity
Submission details
Submission ID
PZ133958.1.seg2/PZ133959.1.seg4/PZ133956.1.seg5/PZ133960.1.seg6/PZ133955.1.seg7/PZ133957.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-11 05:06:51 UTC
Date released
2026-03-11 05:07:20 UTC
INSDC
Bioproject accession
PRJNA989177
INSDC accession seg2
PZ133958.1
INSDC accession seg4
PZ133959.1
INSDC accession seg5
PZ133956.1
INSDC accession seg6
PZ133960.1
INSDC accession seg7
PZ133955.1
INSDC accession seg8
PZ133957.1
NCBI release date
2026-03-10
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-02-22
Isolate name
A/Virginia/GKISBBBI66564/2026
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg2
2318 (100%)
Total inserted nucs seg2
44
Total SNPs seg2
76
Length seg4
1752 (100%)
Total SNPs seg4
115
Length seg5
1542 (100%)
Total inserted nucs seg5
45
Total SNPs seg5
62
Length seg6
1433 (100%)
Total SNPs seg6
25
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
31
Length seg8
878 (100%)
Total inserted nucs seg8
15
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg2
seg2:
C
27
T
seg2:
G
42
A
seg2:
C
51
T
seg2:
A
159
G
seg2:
G
168
A
seg2:
G
180
A
seg2:
C
192
T
seg2:
C
201
T
seg2:
T
207
A
seg2:
T
210
C
seg2:
T
222
C
seg2:
G
225
A
seg2:
C
297
T
seg2:
G
312
A
seg2:
T
324
A
seg2:
G
354
A
seg2:
A
366
G
seg2:
C
447
T
Show more
seg4
seg4:
A
38
G
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
G
221
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
T
320
C
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
409
A
seg4:
G
416
A
Show more
seg5
seg5:
A
33
G
seg5:
G
42
C
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
296
A
seg5:
G
298
A
seg5:
C
303
T
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
Show more
seg6
seg6:
A
33
G
seg6:
T
68
C
seg6:
G
108
A
seg6:
G
143
A
seg6:
A
225
C
seg6:
G
246
A
seg6:
C
301
T
seg6:
T
347
C
seg6:
C
401
T
seg6:
C
452
A
seg6:
G
607
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
G
881
T
seg6:
C
893
T
seg6:
G
914
T
seg6:
A
1049
G
Show more
seg7
seg7:
C
21
T
seg7:
G
48
A
seg7:
G
75
A
seg7:
T
123
C
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
G
60
A
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
G
193
A
seg8:
C
204
T
seg8:
G
207
A
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
A
367
G
Show more
Deletions
None
Insertions
ins_seg2:0:GGCAAACCATTTGA, ins_seg2:2274:TGAATTTAACTTGTCCTTCATGAAAAAATG, ins_seg5:0:GGGTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_seg5:1497:AGAAAAATAC, ins_seg7:0:TAGATGTTTAAAG, ins_seg7:982:AAAACTA, ins_seg8:0:GTGACAAAAACATA, ins_seg8:863:T
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
K
146
E
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
K
131
M
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
T
9
A
NA:
V
34
I
NA:
N
73
H
NA:
V
80
M
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
R
99
K
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
V
65
M
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
D
729
E
PB1:
K
757
R
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
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