GS_00HFZ94.1

USA/GS_00HFZ94.1/2026-02-17
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ096975.1.seg1/PZ096976.1.seg2/PZ096971.1.seg4/PZ096973.1.seg6/PZ096972.1.seg7/PZ096974.1.seg8
Submitting group
Date submitted
2026-03-05 04:22:15 UTC
Date released
2026-03-05 04:22:50 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg4
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-03-03

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.3

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-02-17
Isolate name
B/New York/GKISBBBI03337/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
53
Length seg2
2382 (100%)
Total inserted nucs seg2
24
Total SNPs seg2
55
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg6
1537 (100%)
Total inserted nucs seg6
136
Total SNPs seg6
37
Length seg7
1167 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
18
Length seg8
1081 (99.6%)
Total inserted nucs seg8
19
Total SNPs seg8
16

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • seg1:C95T
  • seg1:C113T
  • seg1:G131T
  • seg1:G197A
  • seg1:A200G
  • seg1:C224T
  • seg1:A257G
  • seg1:C362T
  • seg1:G383A
  • seg1:C434T
  • seg1:T522C
  • seg1:C528A
  • seg1:G623A
  • seg1:C692T
  • seg1:C746A
  • seg1:T797C
  • seg1:C854T
  • seg1:C944T

    • seg2

  • seg2:G12A
  • seg2:A30G
  • seg2:A54G
  • seg2:G81A
  • seg2:T171C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C332A
  • seg2:C342T
  • seg2:C387T
  • seg2:A405G
  • seg2:G441A
  • seg2:G447A
  • seg2:G510A
  • seg2:C513T
  • seg2:A576G
  • seg2:A579G

    • seg4

  • seg4:T195C
  • seg4:C252A
  • seg4:C265T
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:G337A
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:T402C
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:G457A
  • seg4:A461G
  • seg4:A463G

    • seg6

  • seg6:T9C
  • seg6:A108G
  • seg6:C125A
  • seg6:C128T
  • seg6:C140T
  • seg6:G183A
  • seg6:T212C
  • seg6:A358G
  • seg6:T363C
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:C591T
  • seg6:A660C
  • seg6:T714A
  • seg6:T735C
  • seg6:C769A

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:G316A
  • seg7:A419G
  • seg7:G440A
  • seg7:G482A
  • seg7:G500T
  • seg7:G521A
  • seg7:G536A
  • seg7:A566G
  • seg7:C656T
  • seg7:G668A
  • seg7:T772C
  • seg7:A919G
  • seg7:C946T
  • seg7:A967G

    • seg8

  • seg8:G26A
  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:T341C
  • seg8:A352C
  • seg8:T391C
  • seg8:C419T
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G661A
  • seg8:T775C
  • seg8:C882T
  • seg8:A950G
  • seg8:T963C
    • Deletions
    seg4:562-570
    Insertions
    ins_seg1:0:CCTTTA, ins_seg1:2334:AGGCTCGTGTTTCTAC, ins_seg2:0:GTTTTC, ins_seg2:2358:AATGCTCGTGTTTCTACT, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_seg6:1401:TGGGAGAATGGTTAAGTTTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTGCTAAACCTAATTGTTTCTGAAAAATGCTCTTGTT, ins_seg7:0:TTCTTA, ins_seg7:1147:AAAAGTGCGTTGTT, ins_seg8:1066:TAAAAATCCTCTTGTTACT

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:V87I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128G
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

    • M1

  • M1:T15I
  • M1:R105K

    • NA

  • NA:I36M
  • NA:P42Q
  • NA:T43I
  • NA:A47V
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395V
  • NA:V401I

    • NEP

  • NEP:L30S
  • NEP:S93P

    • NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

    • PB1

  • PB1:M65I
  • PB1:I462V
  • PB1:V474I

    • PB2

  • PB2:T110N
  • PB2:A301T
  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
    • Deletions
    HA1:162-164
    Insertions
    None