GS_00HFZ86.1

USA/GS_00HFZ86.1/2026-02-18
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ096969.1.seg1/PZ096970.1.seg2/PZ096965.1.seg4/PZ096968.1.seg5/PZ096967.1.seg6/PZ096966.1.seg7
Submitting group
Date submitted
2026-03-05 04:22:15 UTC
Date released
2026-03-05 04:22:50 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
NCBI release date
2026-03-03

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-02-18
Isolate name
B/New York/GKISBBBJ00274/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2355 (100%)
Total inserted nucs seg1
21
Total SNPs seg1
47
Length seg2
2381 (100%)
Total inserted nucs seg2
23
Total SNPs seg2
55
Length seg4
1849 (98.6%)
Total deleted nucs seg4
9
Total SNPs seg4
59
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
34
Length seg6
1542 (100%)
Total inserted nucs seg6
141
Total SNPs seg6
31
Length seg7
1155 (100%)
Total inserted nucs seg7
8
Total SNPs seg7
16

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • seg1:C95T
  • seg1:C113T
  • seg1:G197A
  • seg1:A200G
  • seg1:A359G
  • seg1:C362T
  • seg1:G383A
  • seg1:T522C
  • seg1:C746A
  • seg1:A827G
  • seg1:C854T
  • seg1:T938C
  • seg1:A950G
  • seg1:T962C
  • seg1:T968C
  • seg1:T995C
  • seg1:G1064A
  • seg1:G1094A

    • seg2

  • seg2:G12A
  • seg2:G39A
  • seg2:A54G
  • seg2:G81A
  • seg2:T171C
  • seg2:T174C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C342T
  • seg2:A405G
  • seg2:G441A
  • seg2:G447A
  • seg2:G510A
  • seg2:C513T
  • seg2:A576G
  • seg2:A594G
  • seg2:A705G

    • seg4

  • seg4:G39A
  • seg4:C188T
  • seg4:C252A
  • seg4:C270T
  • seg4:C276A
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:A435G
  • seg4:C441T
  • seg4:T444C
  • seg4:T456C
  • seg4:G457A
  • seg4:A462C

    • seg5

  • seg5:C3T
  • seg5:T46C
  • seg5:A55G
  • seg5:A121G
  • seg5:C178T
  • seg5:A224G
  • seg5:A235G
  • seg5:G244A
  • seg5:T298C
  • seg5:C313T
  • seg5:G361A
  • seg5:A373G
  • seg5:C380T
  • seg5:A454G
  • seg5:C523T
  • seg5:C608T
  • seg5:A634G
  • seg5:G715T

    • seg6

  • seg6:T9C
  • seg6:C125A
  • seg6:T134C
  • seg6:T212C
  • seg6:C309T
  • seg6:A358G
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:C534T
  • seg6:A660C
  • seg6:T714A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G
  • seg6:A945G
  • seg6:C954T

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T113C
  • seg7:T125A
  • seg7:G218A
  • seg7:G316A
  • seg7:A419G
  • seg7:G482A
  • seg7:G500T
  • seg7:G521A
  • seg7:G536A
  • seg7:A566G
  • seg7:C656T
  • seg7:A919G
  • seg7:A967G
    • Deletions
    seg4:562-570
    Insertions
    ins_seg1:0:CCTTTA, ins_seg1:2334:GGCTCGTGTTTCTAC, ins_seg2:0:GTTTTC, ins_seg2:2358:AATGCTCGTGTTTCTAC, ins_seg5:0:GCATTTTCTTGTTAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAATGCTCTTGTTACTAC, ins_seg7:0:TTCTTA,...

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

    • M1

  • M1:T15I
  • M1:R105K

    • NA

  • NA:P42Q
  • NA:I45T
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397N
  • NA:V401I
  • NA:K404R

    • NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

    • PB1

  • PB1:M65I
  • PB1:V474I

    • PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
    • Deletions
    HA1:162-164
    Insertions
    None