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GS_00HCZT7.1
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USA/GS_00HCZT7.1/2026-02-17
A. Chan
Purdue University, Molecular
Submission details
Submission ID
PZ072204.1.seg4/PZ072205.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-02 05:39:55 UTC
Date released
2026-03-02 05:40:44 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-02-17
Isolate name
A/swine/Indiana/A01812336/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ072204.1
INSDC accession seg6
PZ072205.1
NCBI release date
2026-03-01
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Frame shifts seg4
HA1:185-187(nt:618-625)
Total deleted nucs seg4
2
Total frame shifts seg4
1
Total inserted nucs seg4
2
Total SNPs seg4
128
Length seg6
1410 (98%)
Total SNPs seg6
181
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
G
23
T
seg4:
A
24
T
seg4:
T
26
C
seg4:
G
33
A
seg4:
C
34
T
seg4:
T
42
C
seg4:
C
44
A
seg4:
G
52
A
seg4:
T
60
C
seg4:
A
80
T
seg4:
G
91
A
seg4:
C
94
T
seg4:
G
104
A
seg4:
G
113
A
seg4:
A
125
G
seg4:
C
131
T
seg4:
A
156
G
seg4:
T
185
C
Show more
seg6
seg6:
C
10
G
seg6:
C
11
A
seg6:
A
13
T
seg6:
A
14
C
seg6:
T
15
C
seg6:
C
16
A
seg6:
A
19
T
seg6:
G
21
A
seg6:
T
23
A
seg6:
T
26
A
seg6:
A
27
T
seg6:
C
29
A
seg6:
G
30
T
seg6:
T
32
A
seg6:
T
33
C
seg6:
G
34
A
seg6:
G
35
A
seg6:
C
36
T
Show more
Deletions
seg4:626, seg4:627
Insertions
ins_seg4:617:CC
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
N
31
D
HA1:
S
45
N
HA1:
S
46
F
HA1:
G
50
E
HA1:
D
53
N
HA1:
H
56
Y
HA1:
E
62
G
HA1:
K
82
N
HA1:
S
91
R
HA1:
K
92
N
HA1:
Y
94
H
HA1:
N
96
D
HA1:
A
106
V
HA1:
D
122
K
HA1:
N
133
D
HA1:
T
135
A
Show more
HA2
HA2:
I
32
S
HA2:
N
46
D
HA2:
L
102
M
HA2:
R
121
K
HA2:
D
164
N
HA2:
K
174
E
HA2:
G
181
E
HA2:
R
216
K
NA
NA:
Q
5
K
NA:
T
16
A
NA:
I
17
L
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
43
D
NA:
P
45
S
NA:
L
52
F
NA:
E
54
G
NA:
I
62
K
NA:
T
71
I
NA:
I
73
V
NA:
L
81
P
NA:
N
86
I
Show more
SigPep
SigPep:
K
2
N
SigPep:
T
3
S
SigPep:
A
6
I
SigPep:
Y
9
Q
SigPep:
C
12
Y
SigPep:
F
15
L
Deletions
HA1:188
Insertions
None
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