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GS_00HCZQD.1
Download
Download FASTA
Download metadata TSV
Slovakia/GS_00HCZQD.1/2026-02-03
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ415350.1.seg1/OZ415349.1.seg2/OZ415354.1.seg3/OZ415347.1.seg4/OZ415351.1.seg5/OZ415348.1.seg6/OZ415353.1.seg7/OZ415352.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-02 05:39:55 UTC
Date released
2026-03-02 05:40:44 UTC
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA121821150
INSDC accession seg1
OZ415350.1
INSDC accession seg2
OZ415349.1
INSDC accession seg3
OZ415354.1
INSDC accession seg4
OZ415347.1
INSDC accession seg5
OZ415351.1
INSDC accession seg6
OZ415348.1
INSDC accession seg7
OZ415353.1
INSDC accession seg8
OZ415352.1
NCBI release date
2026-02-28
SRA run accession
ERR16750133
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
Slovakia
Collection date
2026-02-03
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
100
Length seg2
2271 (97%)
Total SNPs seg2
110
Length seg3
2151 (96.3%)
Total SNPs seg3
88
Length seg4
1711 (98.5%)
Total SNPs seg4
125
Length seg5
1497 (95.6%)
Total SNPs seg5
53
Length seg6
1436 (99.8%)
Total SNPs seg6
17
Length seg7
981 (95.5%)
Total SNPs seg7
27
Length seg8
836 (93.9%)
Total SNPs seg8
30
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
C
54
T
seg1:
G
57
A
seg1:
G
87
A
seg1:
C
192
T
seg1:
C
198
T
seg1:
T
255
C
seg1:
A
282
G
seg1:
C
289
A
seg1:
A
336
G
seg1:
G
343
A
seg1:
G
347
A
seg1:
A
369
G
seg1:
G
375
A
seg1:
A
402
G
seg1:
T
417
C
seg1:
T
426
C
seg1:
T
438
C
seg1:
G
447
A
Show more
seg2
seg2:
C
46
T
seg2:
G
57
A
seg2:
C
84
A
seg2:
A
129
G
seg2:
A
132
T
seg2:
A
135
G
seg2:
C
141
T
seg2:
T
171
C
seg2:
A
179
G
seg2:
G
180
A
seg2:
A
213
T
seg2:
A
219
G
seg2:
G
258
A
seg2:
C
282
T
seg2:
C
306
T
seg2:
T
327
C
seg2:
G
336
A
seg2:
A
342
T
Show more
seg3
seg3:
A
99
G
seg3:
A
120
C
seg3:
C
144
T
seg3:
A
156
G
seg3:
T
174
C
seg3:
T
177
C
seg3:
G
210
A
seg3:
T
222
C
seg3:
G
243
A
seg3:
A
324
T
seg3:
A
333
G
seg3:
C
340
T
seg3:
A
342
G
seg3:
A
345
G
seg3:
G
363
A
seg3:
T
369
C
seg3:
A
396
G
seg3:
A
435
G
Show more
seg4
seg4:
A
24
G
seg4:
T
42
A
seg4:
C
54
A
seg4:
G
56
T
seg4:
A
71
C
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
G
155
A
seg4:
A
163
G
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
seg4:
G
213
A
seg4:
G
214
A
seg4:
G
222
A
Show more
seg5
seg5:
G
81
A
seg5:
G
96
A
seg5:
T
180
G
seg5:
G
207
A
seg5:
G
219
A
seg5:
G
237
A
seg5:
C
249
T
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
C
603
T
Show more
seg6
seg6:
A
2
G
seg6:
G
3
T
seg6:
T
5
A
seg6:
G
6
A
seg6:
A
7
G
seg6:
C
10
G
seg6:
C
11
A
seg6:
A
13
T
seg6:
A
14
C
seg6:
T
15
C
seg6:
C
16
A
seg6:
A
19
T
seg6:
A
20
C
seg6:
G
21
A
seg6:
T
23
A
seg6:
A
25
G
seg6:
T
26
A
seg6:
A
27
T
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
seg7:
T
709
C
Show more
seg8
seg8:
C
53
T
seg8:
G
83
A
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
T
271
C
seg8:
C
275
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
A
442
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
K
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
M
24
I
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
SigPep:
L
13
I
Deletions
None
Insertions
None
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