GenSpectrum
Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H1N1pdm
|
Browse data
Select organism section
Browse data
GS_00HCY1T.1
Download
Download FASTA
Download metadata TSV
Slovakia/GS_00HCY1T.1/2026-01-01
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ415202.1.seg1/OZ415201.1.seg2/OZ415197.1.seg3/OZ415195.1.seg4/OZ415199.1.seg5/OZ415196.1.seg6/OZ415198.1.seg7/OZ415200.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-02 05:37:40 UTC
Date released
2026-03-02 05:39:34 UTC
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA121822180
INSDC accession seg1
OZ415202.1
INSDC accession seg2
OZ415201.1
INSDC accession seg3
OZ415197.1
INSDC accession seg4
OZ415195.1
INSDC accession seg5
OZ415199.1
INSDC accession seg6
OZ415196.1
INSDC accession seg7
OZ415198.1
INSDC accession seg8
OZ415200.1
NCBI release date
2026-02-28
SRA run accession
ERR16750176
Clade
Clade HA
D.3.1
Clade NA
D
Sample details
Collection country
Slovakia
Collection date
2026-01-01
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2243 (98.4%)
Total SNPs seg1
88
Length seg2
2220 (95.5%)
Total inserted nucs seg2
4
Total SNPs seg2
70
Total unknown nucs seg2
44
Length seg3
2115 (93.6%)
Total inserted nucs seg3
32
Total SNPs seg3
83
Total unknown nucs seg3
70
Length seg4
1686 (91%)
Total SNPs seg4
99
Total unknown nucs seg4
92
Length seg5
1428 (94.3%)
Total SNPs seg5
57
Total unknown nucs seg5
17
Length seg6
1192 (83.2%)
Total SNPs seg6
21
Length seg7
881 (89.7%)
Total SNPs seg7
31
Length seg8
729 (83.8%)
Total SNPs seg8
33
Total unknown nucs seg8
6
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
G
36
A
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
C
309
T
Show more
seg2
A
63
G
T
81
C
A
159
G
G
168
A
G
180
A
C
192
A
G
204
A
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
A
345
G
A
366
G
T
384
C
C
447
T
T
450
C
Show more
seg3
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
C
468
T
G
477
A
G
498
A
G
504
A
T
552
C
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
T
402
C
A
406
C
C
426
T
Show more
seg6
C
285
T
A
392
G
C
452
A
G
607
A
G
659
A
C
728
A
C
737
T
G
748
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
C
929
T
G
950
A
A
1049
G
C
1187
T
A
1193
G
Show more
seg7
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
633
A
G
660
A
Show more
seg8
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
226
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
G
396
A
T
414
C
G
463
A
Show more
Deletions
N/A
Insertions
seg2
ins_2274:TGAA
seg3
ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATT
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
HA1:
Q
189
E
HA1:
S
203
T
HA1:
I
216
A
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
F
140
L
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
M2:
S
82
N
NA
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NEP
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
V
178
I
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
322
M
PA:
I
330
V
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
R
368
G
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
Load sequences