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Influenza A/H1N1pdm
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GS_00HCXYZ.1
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Download FASTA
Download metadata TSV
Slovakia/GS_00HCXYZ.1/2026-01-02
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ415161.1.seg1/OZ415160.1.seg2/OZ415156.1.seg3/OZ415154.1.seg4/OZ415158.1.seg5/OZ415155.1.seg6/OZ415157.1.seg7/OZ415159.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-02 05:37:40 UTC
Date released
2026-03-02 05:39:34 UTC
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA121821154
INSDC accession seg1
OZ415161.1
INSDC accession seg2
OZ415160.1
INSDC accession seg3
OZ415156.1
INSDC accession seg4
OZ415154.1
INSDC accession seg5
OZ415158.1
INSDC accession seg6
OZ415155.1
INSDC accession seg7
OZ415157.1
INSDC accession seg8
OZ415159.1
NCBI release date
2026-02-28
SRA run accession
ERR16750140
Clade
Clade HA
D.3.1
Clade NA
D
Sample details
Collection country
Slovakia
Collection date
2026-01-02
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2193 (92.5%)
Total SNPs seg1
78
Total unknown nucs seg1
85
Length seg2
2213 (96.7%)
Total inserted nucs seg2
4
Total SNPs seg2
70
Total unknown nucs seg2
10
Length seg3
2101 (95.4%)
Total inserted nucs seg3
22
Total SNPs seg3
83
Total unknown nucs seg3
27
Length seg4
1669 (91.7%)
Total SNPs seg4
108
Total unknown nucs seg4
62
Length seg5
1448 (96.6%)
Total SNPs seg5
59
Total unknown nucs seg5
2
Length seg6
1210 (84.4%)
Total SNPs seg6
20
Length seg7
966 (98.4%)
Total SNPs seg7
31
Length seg8
739 (82.3%)
Total SNPs seg8
32
Total unknown nucs seg8
29
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
G
66
A
seg1:
A
90
C
seg1:
A
96
G
seg1:
A
108
G
seg1:
A
132
G
seg1:
A
138
G
seg1:
G
161
A
seg1:
A
174
G
seg1:
T
201
C
seg1:
C
309
T
seg1:
G
363
A
seg1:
G
375
A
seg1:
A
441
G
seg1:
T
483
C
seg1:
A
560
G
seg1:
G
583
A
seg1:
C
600
A
seg1:
C
619
T
Show more
seg2
seg2:
T
81
C
seg2:
A
159
G
seg2:
G
168
A
seg2:
G
180
A
seg2:
C
192
A
seg2:
G
204
A
seg2:
T
207
A
seg2:
T
210
C
seg2:
T
222
C
seg2:
G
225
A
seg2:
C
297
T
seg2:
A
345
G
seg2:
A
366
G
seg2:
T
384
C
seg2:
C
432
T
seg2:
C
447
T
seg2:
T
450
C
seg2:
G
461
A
Show more
seg3
seg3:
T
81
C
seg3:
G
84
C
seg3:
A
88
G
seg3:
C
90
T
seg3:
C
99
T
seg3:
A
114
T
seg3:
C
153
T
seg3:
C
162
T
seg3:
C
165
T
seg3:
G
187
A
seg3:
G
204
A
seg3:
G
298
A
seg3:
T
390
C
seg3:
G
423
A
seg3:
C
468
T
seg3:
G
477
A
seg3:
G
498
A
seg3:
G
504
A
Show more
seg4
seg4:
A
38
G
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
179
A
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
409
A
seg4:
G
416
A
seg4:
A
429
G
Show more
seg5
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
C
303
T
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
seg5:
T
402
C
seg5:
A
406
C
Show more
seg6
seg6:
C
285
T
seg6:
A
392
G
seg6:
C
452
A
seg6:
G
607
A
seg6:
G
659
A
seg6:
C
728
A
seg6:
G
748
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
914
T
seg6:
C
929
T
seg6:
G
950
A
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1187
T
seg6:
A
1193
G
seg6:
T
1229
C
seg6:
G
1365
A
seg7
seg7:
G
48
A
seg7:
G
75
A
seg7:
T
123
C
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
seg7:
G
633
A
Show more
seg8
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
204
T
seg8:
A
226
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
A
367
G
seg8:
A
375
T
seg8:
G
385
A
seg8:
A
391
G
seg8:
G
396
A
seg8:
T
414
C
seg8:
G
463
A
Show more
Deletions
None
Insertions
ins_seg2:2274:TGAA, ins_seg3:2151:TTGTGGCAATGCTACTATTTGC
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NEP
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
K
400
R
NP:
V
425
I
NS1
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
V
129
I
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
V
178
I
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
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