GS_00HCXMM.1

Slovakia/GS_00HCXMM.1/2026-01-10
T. Sladecek

Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

Submission details

Submission ID
OZ414912.1.seg1/OZ414907.1.seg3/OZ414905.1.seg4/OZ414909.1.seg5/OZ414906.1.seg6/OZ414908.1.seg7/OZ414910.1.seg8
Submitting group
Date submitted
2026-03-02 05:37:40 UTC
Date released
2026-03-02 05:39:34 UTC

INSDC

Bioproject accession
Biosample accession
INSDC accession seg1
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-28

Clade

Clade HA
D.3.1
Clade NA
D

Sample details

Collection country
Slovakia
Collection date
2026-01-10

Host

Host

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2301 (100%)
Total inserted nucs seg1
21
Total SNPs seg1
88
Length seg3
2205 (100%)
Total inserted nucs seg3
54
Total SNPs seg3
87
Length seg4
1745 (99.6%)
Total SNPs seg4
113
Length seg5
1540 (100%)
Total inserted nucs seg5
43
Total SNPs seg5
62
Length seg6
1413 (98.6%)
Total SNPs seg6
22
Length seg7
994 (99.9%)
Total inserted nucs seg7
13
Total SNPs seg7
32
Length seg8
865 (98.6%)
Total inserted nucs seg8
14
Total SNPs seg8
37

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • seg1:A18G
  • seg1:G36A
  • seg1:G66A
  • seg1:A90C
  • seg1:A96G
  • seg1:A108G
  • seg1:A132G
  • seg1:A138G
  • seg1:G161A
  • seg1:A174G
  • seg1:T201C
  • seg1:A225G
  • seg1:A226T
  • seg1:C242T
  • seg1:A243G
  • seg1:C261T
  • seg1:C285A
  • seg1:A291G

    • seg3

  • seg3:G40A
  • seg3:G45A
  • seg3:R53A
  • seg3:A56G
  • seg3:T81C
  • seg3:G84C
  • seg3:A88G
  • seg3:C90T
  • seg3:C99T
  • seg3:A114T
  • seg3:C153T
  • seg3:C162T
  • seg3:C165T
  • seg3:G187A
  • seg3:G204A
  • seg3:G298A
  • seg3:T390C
  • seg3:G423A

    • seg4

  • seg4:A38G
  • seg4:C42A
  • seg4:A47G
  • seg4:G57A
  • seg4:A119G
  • seg4:T161C
  • seg4:C164T
  • seg4:G179A
  • seg4:G188A
  • seg4:A231C
  • seg4:C281A
  • seg4:C293G
  • seg4:C318T
  • seg4:G322A
  • seg4:G360A
  • seg4:G409A
  • seg4:G416A
  • seg4:A429G

    • seg5

  • seg5:A33G
  • seg5:G42T
  • seg5:C87T
  • seg5:A97G
  • seg5:C141A
  • seg5:C171T
  • seg5:T177C
  • seg5:C180T
  • seg5:C249A
  • seg5:A288C
  • seg5:G298A
  • seg5:C303T
  • seg5:G309A
  • seg5:T314C
  • seg5:G315A
  • seg5:R341A
  • seg5:T365A
  • seg5:A390G

    • seg6

  • seg6:C285T
  • seg6:A392G
  • seg6:C452A
  • seg6:G607A
  • seg6:G659A
  • seg6:C728A
  • seg6:G748A
  • seg6:A785G
  • seg6:T799C
  • seg6:A818G
  • seg6:C893T
  • seg6:G914T
  • seg6:C929T
  • seg6:G950A
  • seg6:T1016C
  • seg6:A1049G
  • seg6:C1187T
  • seg6:A1193G

    • seg7

  • seg7:G48A
  • seg7:G75A
  • seg7:T123C
  • seg7:C124A
  • seg7:G238A
  • seg7:G258A
  • seg7:A293G
  • seg7:G306A
  • seg7:G339A
  • seg7:G342A
  • seg7:C375A
  • seg7:T432C
  • seg7:G441T
  • seg7:G492A
  • seg7:C507A
  • seg7:A574G
  • seg7:C622A
  • seg7:G633A

    • seg8

  • seg8:C6A
  • seg8:C42T
  • seg8:C54T
  • seg8:T99C
  • seg8:C108A
  • seg8:T159C
  • seg8:G163A
  • seg8:C192T
  • seg8:C204T
  • seg8:A226T
  • seg8:A238G
  • seg8:G250A
  • seg8:C264T
  • seg8:C268A
  • seg8:C315T
  • seg8:A367G
  • seg8:A375T
  • seg8:G385A
    • Deletions
    None
    Insertions
    ins_seg1:0:TATTCAAT, ins_seg1:2280:TGTCGAATTGTTT, ins_seg3:0:TGATCCAAA, ins_seg3:2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA, ins_seg5:0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_seg5:1497:AGAAAAATAC, ins_seg7:0:TAGATGTTTAAAG, ins_seg8:0:GTGACAAAAACATA

    Amino acid mutations

    Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

    Substitutions

    HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139D
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P

    • HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

    • M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

    • M2

  • M2:R18K
  • M2:D21G
  • M2:S23N
  • M2:I28T
  • M2:G89S

    • NA

  • NA:P93S
  • NA:S200N
  • NA:S247N
  • NA:I264T
  • NA:M314I
  • NA:V453M
  • NA:K469N

    • NEP

  • NEP:D2E
  • NEP:M14T
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

    • NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:K400R
  • NP:V425I
  • NP:S498N

    • NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T76S
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:V129I
  • NS1:K131E
  • NS1:A155T
  • NS1:P164S
  • NS1:V178I
  • NS1:N205S

    • PA

  • PA:V14I
  • PA:X18E
  • PA:K19R
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

    • PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:K19R
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

    • PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:K187R
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

    • SigPep

  • SigPep:L8M
  • SigPep:A13T
    • Deletions
    None
    Insertions
    None