GenSpectrum
Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H1N1pdm
|
Browse data
Select organism section
Browse data
GS_00HCS9H.1
Download
Download FASTA
Download metadata TSV
USA/GS_00HCS9H.1/2026-01-06
A. S. Lauring,
L. Baker &
E. Bendall
Lauring Lab at University of Michigan, Department of Microbiology and Immunology
Submission details
Submission ID
PZ070311.1.seg1/PZ070312.1.seg2/PZ070308.1.seg3/PZ070309.1.seg4/PZ070310.1.seg5/PZ070306.1.seg6/PZ070307.1.seg7/PZ070313.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-01 05:26:29 UTC
Date released
2026-03-01 05:28:04 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
Michigan
Collection date
2026-01-06
Isolate name
A/Michigan/UM-10068618660/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ070311.1
INSDC accession seg2
PZ070312.1
INSDC accession seg3
PZ070308.1
INSDC accession seg4
PZ070309.1
INSDC accession seg5
PZ070310.1
INSDC accession seg6
PZ070306.1
INSDC accession seg7
PZ070307.1
INSDC accession seg8
PZ070313.1
NCBI release date
2026-02-27
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
90
Length seg2
2274 (100%)
Total SNPs seg2
79
Length seg3
2151 (100%)
Total SNPs seg3
83
Length seg4
1701 (97.1%)
Total SNPs seg4
113
Length seg5
1497 (100%)
Total SNPs seg5
59
Length seg6
1410 (98.4%)
Total SNPs seg6
22
Length seg7
982 (100%)
Total SNPs seg7
31
Length seg8
838 (97.1%)
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
A
18
G
seg1:
G
66
A
seg1:
A
90
C
seg1:
A
96
G
seg1:
A
108
G
seg1:
A
132
G
seg1:
A
138
G
seg1:
G
161
A
seg1:
A
174
G
seg1:
T
201
C
seg1:
A
225
G
seg1:
A
226
T
seg1:
C
242
T
seg1:
A
243
G
seg1:
C
261
T
seg1:
C
285
A
seg1:
A
291
G
seg1:
C
309
T
Show more
seg2
seg2:
C
27
T
seg2:
G
42
A
seg2:
A
159
G
seg2:
G
168
A
seg2:
G
180
A
seg2:
C
192
T
seg2:
C
201
T
seg2:
T
207
A
seg2:
T
210
C
seg2:
T
222
C
seg2:
G
225
A
seg2:
C
297
T
seg2:
G
312
A
seg2:
T
324
A
seg2:
G
354
A
seg2:
A
366
G
seg2:
C
447
T
seg2:
T
450
C
Show more
seg3
seg3:
G
40
A
seg3:
R
53
A
seg3:
T
81
C
seg3:
G
84
C
seg3:
A
88
G
seg3:
C
90
T
seg3:
C
99
T
seg3:
A
114
T
seg3:
C
153
T
seg3:
C
162
T
seg3:
C
165
T
seg3:
G
187
A
seg3:
G
204
A
seg3:
G
298
A
seg3:
G
423
A
seg3:
C
441
A
seg3:
G
477
A
seg3:
G
498
A
Show more
seg4
seg4:
A
38
G
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
409
A
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
Show more
seg5
seg5:
G
42
T
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
C
303
T
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
seg5:
T
402
C
Show more
seg6
seg6:
A
33
G
seg6:
T
68
C
seg6:
A
225
C
seg6:
C
301
T
seg6:
T
347
C
seg6:
C
401
T
seg6:
C
452
A
seg6:
G
607
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
G
881
T
seg6:
C
893
T
seg6:
G
914
T
seg6:
A
1049
G
seg6:
C
1187
T
seg6:
A
1193
G
seg6:
A
1208
G
Show more
seg7
seg7:
G
48
A
seg7:
G
75
A
seg7:
T
123
C
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
C
447
A
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
G
60
A
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
G
364
T
seg8:
A
367
G
seg8:
A
375
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
S
128
P
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
T
9
A
NA:
N
73
H
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
A
122
S
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA:
L
683
I
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
D
729
E
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
Load sequences