GS_00H6SP0.1

USA/GS_00H6SP0.1/2026-02-05
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ053400.1.seg1/PZ052985.1.seg4/PZ053163.1.seg5/PZ053106.1.seg6/PZ053046.1.seg7
Submitting group
Date submitted
2026-02-26 04:31:24 UTC
Date released
2026-02-26 04:31:56 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
Rhode Island
Collection date
2026-02-05
Isolate name
A/Rhode Island/USAFSAM-17042/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
NCBI release date
2026-02-25

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Alignment and QC

Length seg1
2280 (97.4%)
Total SNPs seg1
103
Length seg4
1701 (97.9%)
Total SNPs seg4
124
Length seg5
1497 (95.6%)
Total SNPs seg5
53
Length seg6
1410 (98%)
Total SNPs seg6
17
Length seg7
982 (95.6%)
Total SNPs seg7
28

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg1

  • seg1:C54T
  • seg1:G57A
  • seg1:T75C
  • seg1:G87A
  • seg1:G126A
  • seg1:C192T
  • seg1:C198T
  • seg1:T255C
  • seg1:A282G
  • seg1:C289A
  • seg1:A336G
  • seg1:G343A
  • seg1:G347A
  • seg1:A369G
  • seg1:G375A
  • seg1:A402G
  • seg1:T417C
  • seg1:T426C

    • seg4

  • seg4:A24G
  • seg4:T42A
  • seg4:G56T
  • seg4:A71C
  • seg4:C72A
  • seg4:T74A
  • seg4:C77T
  • seg4:C89T
  • seg4:G155A
  • seg4:C189T
  • seg4:G199A
  • seg4:C203A
  • seg4:C208T
  • seg4:G213A
  • seg4:G214A
  • seg4:G222A
  • seg4:A250G
  • seg4:A251G

    • seg5

  • seg5:G81A
  • seg5:G96A
  • seg5:T180G
  • seg5:G219A
  • seg5:G237A
  • seg5:C249T
  • seg5:A351G
  • seg5:G390A
  • seg5:G432T
  • seg5:G436T
  • seg5:T447C
  • seg5:A451C
  • seg5:C459T
  • seg5:G492A
  • seg5:A513G
  • seg5:T525C
  • seg5:A597G
  • seg5:C603T

    • seg6

  • seg6:C10G
  • seg6:C11A
  • seg6:A13T
  • seg6:A14C
  • seg6:T15C
  • seg6:C16A
  • seg6:A19T
  • seg6:A20C
  • seg6:G21A
  • seg6:T23A
  • seg6:A25G
  • seg6:T26A
  • seg6:A27T
  • seg6:C29A
  • seg6:G30T
  • seg6:T32A
  • seg6:T33C
  • seg6:G35A

    • seg7

  • seg7:A37T
  • seg7:C188T
  • seg7:G205A
  • seg7:G214T
  • seg7:A241G
  • seg7:G250A
  • seg7:T292C
  • seg7:T298C
  • seg7:A481G
  • seg7:C493T
  • seg7:A517G
  • seg7:G523A
  • seg7:C574T
  • seg7:A637G
  • seg7:A658G
  • seg7:G680A
  • seg7:C697T
  • seg7:T703C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

    Substitutions

    HA1

  • HA1:K2N
  • HA1:L3I
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:S124N
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

    • HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:N53S
  • HA2:I77V
  • HA2:V84I
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

    • M1

  • M1:V219I

    • M2

  • M2:P25L
  • M2:V28I
  • M2:S31N
  • M2:L54F
  • M2:N82S
  • M2:D88A

    • NA

  • NA:L81P
  • NA:N93G
  • NA:P126L
  • NA:D147N
  • NA:V194I
  • NA:I215V
  • NA:K220N
  • NA:E221D
  • NA:S245N
  • NA:S247T
  • NA:H264N
  • NA:T265A
  • NA:T267K
  • NA:L285P
  • NA:V303I
  • NA:Y310H
  • NA:S315R
  • NA:N329S

    • NP

  • NP:A131S
  • NP:I136L
  • NP:V197I
  • NP:R236K
  • NP:T472A

    • PB2

  • PB2:A106T
  • PB2:S107N
  • PB2:I147T
  • PB2:E249G
  • PB2:K340R
  • PB2:E341D
  • PB2:K353R
  • PB2:I394V
  • PB2:I451V
  • PB2:H453N
  • PB2:V560I
  • PB2:I588T
  • PB2:T613A

    • SigPep

  • SigPep:T3A
  • SigPep:Y9N
    • Deletions
    None
    Insertions
    None