GS_00H6R9W.1

USA/GS_00H6R9W.1/2026-02-05
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ053326.1.seg2/PZ053266.1.seg3/PZ052968.1.seg4/PZ053147.1.seg5/PZ053090.1.seg6/PZ053030.1.seg7/PZ053207.1.seg8
Submitting group
Date submitted
2026-02-26 04:31:24 UTC
Date released
2026-02-26 04:31:56 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-02-05
Isolate name
A/New York/USAFSAM-17025/2026

Host

Host

INSDC

INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-25

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Alignment and QC

Length seg2
2274 (97.1%)
Total SNPs seg2
112
Length seg3
2151 (96.3%)
Total SNPs seg3
88
Length seg4
1701 (97.9%)
Total SNPs seg4
124
Length seg5
1497 (95.6%)
Total SNPs seg5
56
Length seg6
1410 (98%)
Total SNPs seg6
18
Length seg7
982 (95.6%)
Total SNPs seg7
26
Length seg8
838 (94.2%)
Total SNPs seg8
32

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg2

  • seg2:C46T
  • seg2:G57A
  • seg2:C84A
  • seg2:A129G
  • seg2:A132T
  • seg2:A135G
  • seg2:C141T
  • seg2:T171C
  • seg2:A179G
  • seg2:G180A
  • seg2:G208T
  • seg2:A213T
  • seg2:A219G
  • seg2:G258A
  • seg2:C282T
  • seg2:C306T
  • seg2:T327C
  • seg2:G336A

    • seg3

  • seg3:A99G
  • seg3:A120C
  • seg3:C144T
  • seg3:A156G
  • seg3:T174C
  • seg3:T177C
  • seg3:G210A
  • seg3:T222C
  • seg3:G243A
  • seg3:A324T
  • seg3:A333G
  • seg3:C340T
  • seg3:A342G
  • seg3:A345G
  • seg3:G363A
  • seg3:T369C
  • seg3:A396G
  • seg3:A435G

    • seg4

  • seg4:A24G
  • seg4:T42A
  • seg4:G56T
  • seg4:A71C
  • seg4:C72A
  • seg4:T74A
  • seg4:C77T
  • seg4:C89T
  • seg4:G155A
  • seg4:A163G
  • seg4:C189T
  • seg4:G199A
  • seg4:C203A
  • seg4:C208T
  • seg4:G213A
  • seg4:G214A
  • seg4:G222A
  • seg4:A250G

    • seg5

  • seg5:G81A
  • seg5:G96A
  • seg5:T180G
  • seg5:G207A
  • seg5:G219A
  • seg5:G237A
  • seg5:C249T
  • seg5:A351G
  • seg5:G390A
  • seg5:G432T
  • seg5:G436T
  • seg5:T447C
  • seg5:A451C
  • seg5:C459T
  • seg5:G492A
  • seg5:A513G
  • seg5:T525C
  • seg5:A582C

    • seg6

  • seg6:C10G
  • seg6:C11A
  • seg6:A13T
  • seg6:A14C
  • seg6:T15C
  • seg6:C16A
  • seg6:A19T
  • seg6:A20C
  • seg6:G21A
  • seg6:T23A
  • seg6:A25G
  • seg6:T26A
  • seg6:A27T
  • seg6:C29A
  • seg6:G30T
  • seg6:T32A
  • seg6:T33C
  • seg6:G35A

    • seg7

  • seg7:A37T
  • seg7:C188T
  • seg7:G205A
  • seg7:G214T
  • seg7:A241G
  • seg7:T292C
  • seg7:T298C
  • seg7:A466G
  • seg7:A481G
  • seg7:C493T
  • seg7:A517G
  • seg7:G523A
  • seg7:A637G
  • seg7:A658G
  • seg7:G680A
  • seg7:C697T
  • seg7:T703C
  • seg7:C787T

    • seg8

  • seg8:C53T
  • seg8:G83A
  • seg8:G102A
  • seg8:A104C
  • seg8:C116T
  • seg8:C123A
  • seg8:T125C
  • seg8:C137T
  • seg8:G192T
  • seg8:T205C
  • seg8:T218C
  • seg8:A238G
  • seg8:T271C
  • seg8:C275G
  • seg8:G353A
  • seg8:G398A
  • seg8:G413T
  • seg8:G416A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

    Substitutions

    HA1

  • HA1:K2N
  • HA1:L3I
  • HA1:Q33R
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

    • HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

    • M1

  • M1:V219I

    • M2

  • M2:P25L
  • M2:S31N
  • M2:L54F
  • M2:N82S
  • M2:D88A

    • NA

  • NA:K80T
  • NA:L81P
  • NA:N93G
  • NA:P126L
  • NA:D147N
  • NA:V194I
  • NA:I215V
  • NA:K220N
  • NA:E221D
  • NA:S245N
  • NA:S247T
  • NA:H264N
  • NA:T267K
  • NA:L285P
  • NA:V303I
  • NA:Y310H
  • NA:V313A
  • NA:S315R

    • NP

  • NP:A131S
  • NP:I136L
  • NP:V197I
  • NP:R236K
  • NP:T472A

    • NS1

  • NS1:E26N
  • NS1:L33I
  • NS1:A56S
  • NS1:V60A
  • NS1:E71G
  • NS1:V82A
  • NS1:M124I
  • NS1:M129I
  • NS1:S135N
  • NS1:D139G
  • NS1:I171V
  • NS1:L185F
  • NS1:K221E
  • NS1:K229E

    • PA

  • PA:N142K
  • PA:I155M
  • PA:K158R
  • PA:S208T
  • PA:K222N
  • PA:K256Q
  • PA:N272S
  • PA:I311M
  • PA:Y321C
  • PA:D382E
  • PA:D396E
  • PA:N409S
  • PA:I421V
  • PA:Y437H
  • PA:I602V
  • PA:K605R
  • PA:V668I
  • PA:N675K

    • PA-X

  • PA-X:N142K
  • PA-X:I155M
  • PA-X:K158R
  • PA-X:E209G
  • PA-X:V212A
  • PA-X:N222T

    • PB1

  • PB1:K52R
  • PB1:G62W
  • PB1:V113A
  • PB1:V423I
  • PB1:L576I
  • PB1:R586K
  • PB1:A587T
  • PB1:E618D
  • PB1:N667I
  • PB1:*758Q

    • PB1-F2

  • PB1-F2:E4G
  • PB1-F2:Q5L
  • PB1-F2:D6G
  • PB1-F2:P8L
  • PB1-F2:I18T
  • PB1-F2:R21E
  • PB1-F2:H32L
  • PB1-F2:N34S
  • PB1-F2:S47N
  • PB1-F2:T55I
  • PB1-F2:S63F
  • PB1-F2:V70A
  • PB1-F2:R73K
  • PB1-F2:H75L
  • PB1-F2:S82P
  • PB1-F2:K85R
  • PB1-F2:W88*

    • SigPep

  • SigPep:T3A
  • SigPep:Y9N
    • Deletions
    None
    Insertions
    None