GS_00H6QQ0.1

USA/GS_00H6QQ0.1/2026-02-05
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ052839.1.seg1/PZ052840.1.seg2/PZ052838.1.seg3/PZ052833.1.seg4/PZ052836.1.seg5/PZ052835.1.seg6/PZ052834.1.seg7/PZ052837.1.seg8
Submitting group
Date submitted
2026-02-26 04:27:34 UTC
Date released
2026-02-26 04:28:13 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
Alaska
Collection date
2026-02-05
Isolate name
B/Alaska/USAFSAM-17060/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-25

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
39
Length seg2
2313 (98.1%)
Total SNPs seg2
44
Length seg3
2181 (97.1%)
Total SNPs seg3
44
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
48
Length seg5
1683 (96.2%)
Total SNPs seg5
31
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
34
Length seg7
1076 (93.8%)
Total SNPs seg7
19
Length seg8
1027 (96.3%)
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • seg1:C113T
  • seg1:A200G
  • seg1:T219C
  • seg1:G251A
  • seg1:G383A
  • seg1:T386C
  • seg1:C434T
  • seg1:T522C
  • seg1:C528A
  • seg1:C746A
  • seg1:A764G
  • seg1:C830T
  • seg1:C854T
  • seg1:A950G
  • seg1:T962C
  • seg1:T968C
  • seg1:C1037T
  • seg1:G1064A

    • seg2

  • seg2:G12A
  • seg2:A54G
  • seg2:G81A
  • seg2:T171C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C342T
  • seg2:A405G
  • seg2:G441A
  • seg2:G447A
  • seg2:C513T
  • seg2:A576G
  • seg2:T586C
  • seg2:A594G
  • seg2:A705G
  • seg2:G768A
  • seg2:A801G

    • seg3

  • seg3:T111C
  • seg3:C117T
  • seg3:T339C
  • seg3:G414A
  • seg3:T423C
  • seg3:G549A
  • seg3:A618G
  • seg3:T654C
  • seg3:A771G
  • seg3:C813T
  • seg3:G867A
  • seg3:G888A
  • seg3:C897T
  • seg3:A935G
  • seg3:G936A
  • seg3:A987G
  • seg3:C1006T
  • seg3:A1054G

    • seg4

  • seg4:T159C
  • seg4:C252A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:C453T
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T
  • seg4:T510C

    • seg5

  • seg5:T46C
  • seg5:C172T
  • seg5:C178T
  • seg5:A224G
  • seg5:A235G
  • seg5:T298C
  • seg5:C313T
  • seg5:G361A
  • seg5:A373G
  • seg5:C380T
  • seg5:G435A
  • seg5:A454G
  • seg5:C523T
  • seg5:C608T
  • seg5:A634G
  • seg5:T742C
  • seg5:A763G
  • seg5:C841T

    • seg6

  • seg6:T9C
  • seg6:C125A
  • seg6:T155C
  • seg6:T212C
  • seg6:C318A
  • seg6:A358G
  • seg6:C394T
  • seg6:C399T
  • seg6:C429T
  • seg6:A504G
  • seg6:C519T
  • seg6:A557G
  • seg6:A660C
  • seg6:T714A
  • seg6:G825A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:A377G
  • seg7:A419G
  • seg7:G482A
  • seg7:G500T
  • seg7:T515C
  • seg7:G521A
  • seg7:G536A
  • seg7:C542T
  • seg7:A566G
  • seg7:C656T
  • seg7:G668A
  • seg7:A919G
  • seg7:C928T
  • seg7:A967G
  • seg7:T1075C

    • seg8

  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:T341C
  • seg8:A352C
  • seg8:T391C
  • seg8:T400C
  • seg8:T401C
  • seg8:C419T
  • seg8:A426G
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G652A
  • seg8:G661A
  • seg8:G685A
  • seg8:T775C
  • seg8:C882T
    • Deletions
    seg4:562-570
    Insertions
    ins_seg6:0:ATGAACA

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:M156V
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

    • HA2

  • HA2:D150N

    • M1

  • M1:T15I

    • NA

  • NA:P42Q
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

    • NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

    • NP

  • NP:T66A
  • NP:R136K
  • NP:V453A

    • NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:S124P
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

    • PA

  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

    • PB1

  • PB1:D454N
  • PB1:V474I

    • PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
    • Deletions
    HA1:162-164
    Insertions
    None