GS_00H6QL8.1

USA/GS_00H6QL8.1/2026-02-09
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ052827.1.seg1/PZ052831.1.seg2/PZ052824.1.seg3/PZ052794.1.seg4/PZ052801.1.seg7/PZ052818.1.seg8
Submitting group
Date submitted
2026-02-26 04:27:34 UTC
Date released
2026-02-26 04:28:13 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Missouri
Collection date
2026-02-09
Isolate name
B/Missouri/USAFSAM-17074/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-25

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
41
Length seg2
2313 (98.1%)
Total SNPs seg2
46
Length seg3
2181 (97.1%)
Total SNPs seg3
50
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
51
Length seg7
1076 (93.8%)
Total SNPs seg7
21
Length seg8
1027 (96.3%)
Total SNPs seg8
20

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • seg1:C113T
  • seg1:A200G
  • seg1:T219C
  • seg1:G251A
  • seg1:G383A
  • seg1:T386C
  • seg1:C434T
  • seg1:T522C
  • seg1:C528A
  • seg1:C581A
  • seg1:C708T
  • seg1:C746A
  • seg1:A764G
  • seg1:A800G
  • seg1:C830T
  • seg1:C854T
  • seg1:A950G
  • seg1:T962C

    • seg2

  • seg2:G12A
  • seg2:A54G
  • seg2:G81A
  • seg2:T171C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C342T
  • seg2:A405G
  • seg2:A435G
  • seg2:G441A
  • seg2:G447A
  • seg2:G477T
  • seg2:C513T
  • seg2:A576G
  • seg2:T586C
  • seg2:A594G
  • seg2:A705G

    • seg3

  • seg3:T111C
  • seg3:C117T
  • seg3:T339C
  • seg3:C345T
  • seg3:G414A
  • seg3:T423C
  • seg3:G465A
  • seg3:G549A
  • seg3:A618G
  • seg3:T654C
  • seg3:A771G
  • seg3:C813T
  • seg3:G867A
  • seg3:G888A
  • seg3:C897T
  • seg3:A935G
  • seg3:G936A
  • seg3:A987G

    • seg4

  • seg4:T125C
  • seg4:G144A
  • seg4:T159C
  • seg4:C252A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:C453T
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T

    • seg7

  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:C128A
  • seg7:A377G
  • seg7:T404C
  • seg7:A419G
  • seg7:G482A
  • seg7:G500T
  • seg7:T515C
  • seg7:G521A
  • seg7:A524G
  • seg7:G536A
  • seg7:C542T
  • seg7:A566G
  • seg7:C656T
  • seg7:G668A
  • seg7:A919G

    • seg8

  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:T341C
  • seg8:A352C
  • seg8:T391C
  • seg8:T400C
  • seg8:C419T
  • seg8:A426G
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G661A
  • seg8:G685A
  • seg8:T775C
  • seg8:C882T
  • seg8:A950G
  • seg8:T963C
  • seg8:A995G
  • seg8:G1029A
    • Deletions
    seg4:562-570
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:V16A
  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

    • M1

  • M1:T15I

    • NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

    • NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

    • PA

  • PA:K312R
  • PA:S348N
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

    • PB1

  • PB1:V474I

    • PB2

  • PB2:X303I
  • PB2:S444N
  • PB2:I492T
  • PB2:X582E
  • PB2:M675I
    • Deletions
    HA1:162-164
    Insertions
    None