GS_00H6QGH.1

USA/GS_00H6QGH.1/2026-02-04
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ052788.1.seg4/PZ052806.1.seg5/PZ052796.1.seg7/PZ052812.1.seg8
Submitting group
Date submitted
2026-02-26 04:27:34 UTC
Date released
2026-02-26 04:28:13 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Alaska
Collection date
2026-02-04
Isolate name
B/Alaska/USAFSAM-17061/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg5
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-25

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
48
Length seg5
1683 (96.2%)
Total SNPs seg5
32
Length seg7
1076 (93.8%)
Total SNPs seg7
19
Length seg8
1027 (96.3%)
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • seg4:T159C
  • seg4:C252A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:C453T
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T
  • seg4:T510C

    • seg5

  • seg5:T46C
  • seg5:C172T
  • seg5:C178T
  • seg5:A224G
  • seg5:A235G
  • seg5:T298C
  • seg5:C313T
  • seg5:G361A
  • seg5:A373G
  • seg5:C380T
  • seg5:G435A
  • seg5:A454G
  • seg5:C523T
  • seg5:C608T
  • seg5:A634G
  • seg5:T742C
  • seg5:A763G
  • seg5:C841T

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:A377G
  • seg7:A419G
  • seg7:G482A
  • seg7:G500T
  • seg7:T515C
  • seg7:G521A
  • seg7:G536A
  • seg7:C542T
  • seg7:A566G
  • seg7:C656T
  • seg7:G668A
  • seg7:A919G
  • seg7:C928T
  • seg7:A967G
  • seg7:T1075C

    • seg8

  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:T341C
  • seg8:A352C
  • seg8:T391C
  • seg8:T400C
  • seg8:T401C
  • seg8:C419T
  • seg8:A426G
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G652A
  • seg8:G661A
  • seg8:G685A
  • seg8:T775C
  • seg8:C882T
    • Deletions
    seg4:562-570
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:M156V
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

    • HA2

  • HA2:D150N

    • M1

  • M1:T15I

    • NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

    • NP

  • NP:T66A
  • NP:R136K
  • NP:V453A

    • NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:S124P
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y
    • Deletions
    HA1:162-164
    Insertions
    None