GS_00H6QAV.1

USA/GS_00H6QAV.1/2026-02-04
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ052740.1.seg2/PZ052736.1.seg3/PZ052722.1.seg4/PZ052730.1.seg5/PZ052727.1.seg6/PZ052725.1.seg7/PZ052733.1.seg8
Submitting group
Date submitted
2026-02-26 04:27:34 UTC
Date released
2026-02-26 04:28:13 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
South Carolina
Collection date
2026-02-04
Isolate name
B/South Carolina/USAFSAM-17057/2026

Host

Host

INSDC

INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-25

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg2
2313 (98.1%)
Total SNPs seg2
53
Length seg3
2181 (97.1%)
Total SNPs seg3
53
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
57
Length seg5
1683 (96.2%)
Total SNPs seg5
30
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
31
Length seg7
1076 (93.8%)
Total SNPs seg7
18
Length seg8
1027 (96.3%)
Total SNPs seg8
17

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • seg2:G12A
  • seg2:G39A
  • seg2:A54G
  • seg2:G81A
  • seg2:T171C
  • seg2:T174C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C342T
  • seg2:A405G
  • seg2:G441A
  • seg2:G447A
  • seg2:G510A
  • seg2:C513T
  • seg2:A576G
  • seg2:A594G
  • seg2:A705G

    • seg3

  • seg3:T15C
  • seg3:T72C
  • seg3:T88C
  • seg3:T111C
  • seg3:C117T
  • seg3:T339C
  • seg3:G414A
  • seg3:T423C
  • seg3:G549A
  • seg3:A618G
  • seg3:A708G
  • seg3:A771G
  • seg3:C813T
  • seg3:T837C
  • seg3:G867A
  • seg3:C897T
  • seg3:A935G
  • seg3:G936A

    • seg4

  • seg4:G39A
  • seg4:C188T
  • seg4:C252A
  • seg4:C270T
  • seg4:C276A
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:A435G
  • seg4:C441T
  • seg4:T444C
  • seg4:T456C
  • seg4:G457A
  • seg4:A462T

    • seg5

  • seg5:T46C
  • seg5:A55G
  • seg5:A121G
  • seg5:C178T
  • seg5:A224G
  • seg5:A235G
  • seg5:G244A
  • seg5:T298C
  • seg5:C313T
  • seg5:G361A
  • seg5:A373G
  • seg5:C380T
  • seg5:A454G
  • seg5:C523T
  • seg5:C608T
  • seg5:A634G
  • seg5:G715T
  • seg5:A763G

    • seg6

  • seg6:T9C
  • seg6:C125A
  • seg6:T134C
  • seg6:T212C
  • seg6:A358G
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:C534T
  • seg6:A660C
  • seg6:T714A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G
  • seg6:A945G
  • seg6:C954T
  • seg6:C987T

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:G66A
  • seg7:A83G
  • seg7:T113C
  • seg7:T125A
  • seg7:A176T
  • seg7:G316A
  • seg7:A419G
  • seg7:G482A
  • seg7:G500T
  • seg7:G521A
  • seg7:G536A
  • seg7:A566G
  • seg7:C656T
  • seg7:T753C
  • seg7:A919G
  • seg7:A967G

    • seg8

  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:T341C
  • seg8:A352C
  • seg8:T355C
  • seg8:G376A
  • seg8:T391C
  • seg8:C419T
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G661A
  • seg8:T775C
  • seg8:C882T
  • seg8:A950G
  • seg8:T963C
    • Deletions
    seg4:562-570
    Insertions
    ins_seg6:0:ATGAACA

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    BM2

  • BM2:L2P

    • HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

    • M1

  • M1:T15I
  • M1:A22T
  • M1:R105K

    • NA

  • NA:P42Q
  • NA:I45T
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397N
  • NA:V401I
  • NA:S402A
  • NA:K404R

    • NEP

  • NEP:L30S
  • NEP:S93P

    • NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

    • NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

    • PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

    • PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
    • Deletions
    HA1:162-164
    Insertions
    None