GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
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Influenza B/Victoria
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Browse data
GS_00H6Q55.1
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USA/GS_00H6Q55.1/2026-02-05
R. S. Cox,
G. Goodwin,
J. Freeman,
G. Godfrey &
D. Hook
South Carolina Dept. of Public Health, South Carolina Dept. of Public Health
Submission details
Submission ID
PZ052378.1.seg1/PZ052379.1.seg2/PZ052377.1.seg3/PZ052372.1.seg4/PZ052375.1.seg5/PZ052374.1.seg6/PZ052373.1.seg7/PZ052376.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-26 04:27:34 UTC
Date released
2026-02-26 04:28:13 UTC
INSDC
Bioproject accession
PRJNA1419796
Biosample accession
SAMN55949062
INSDC accession seg1
PZ052378.1
INSDC accession seg2
PZ052379.1
INSDC accession seg3
PZ052377.1
INSDC accession seg4
PZ052372.1
INSDC accession seg5
PZ052375.1
INSDC accession seg6
PZ052374.1
INSDC accession seg7
PZ052373.1
INSDC accession seg8
PZ052376.1
NCBI release date
2026-02-25
SRA run accession
SRR37362381
Clade
Clade HA
V1A.3a.2
Clade NA
B.7.1
Sample details
Collection country
USA
Collection subdivision level 1
South Carolina
Collection date
2026-02-05
Isolate name
B/South Carolina/SCPHL-FLU26-0042/2026
Host
Host
Homo sapiens
INSDC seg4
Lineage seg4
vic
Alignment and QC
Length seg1
2259 (96.8%)
Total SNPs seg1
40
Length seg2
2313 (98.1%)
Total SNPs seg2
47
Length seg3
2181 (97.1%)
Total SNPs seg3
47
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
49
Length seg5
1683 (96.2%)
Total SNPs seg5
31
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
37
Length seg7
1076 (93.8%)
Total SNPs seg7
20
Length seg8
1027 (96.3%)
Total SNPs seg8
23
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
seg1:
C
113
T
seg1:
A
200
G
seg1:
T
219
C
seg1:
G
251
A
seg1:
G
383
A
seg1:
T
386
C
seg1:
C
434
T
seg1:
T
522
C
seg1:
C
528
A
seg1:
T
573
A
seg1:
C
641
T
seg1:
C
746
A
seg1:
A
764
G
seg1:
C
830
T
seg1:
C
854
T
seg1:
A
950
G
seg1:
T
962
C
seg1:
T
968
C
Show more
seg2
seg2:
G
12
A
seg2:
A
54
G
seg2:
G
81
A
seg2:
T
171
C
seg2:
T
240
C
seg2:
T
300
A
seg2:
T
330
C
seg2:
C
342
T
seg2:
A
405
G
seg2:
G
441
A
seg2:
G
447
A
seg2:
C
513
T
seg2:
A
576
G
seg2:
T
586
C
seg2:
A
594
G
seg2:
A
639
G
seg2:
A
705
G
seg2:
G
768
A
Show more
seg3
seg3:
T
111
C
seg3:
C
117
T
seg3:
T
339
C
seg3:
G
414
A
seg3:
T
423
C
seg3:
G
549
A
seg3:
A
618
G
seg3:
T
654
C
seg3:
A
771
G
seg3:
C
813
T
seg3:
G
867
A
seg3:
G
888
A
seg3:
C
897
T
seg3:
A
935
G
seg3:
G
936
A
seg3:
A
987
G
seg3:
C
1006
T
seg3:
A
1054
G
Show more
seg4
seg4:
T
159
C
seg4:
G
174
A
seg4:
T
198
C
seg4:
C
252
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
C
453
T
seg4:
G
457
A
seg4:
G
460
A
seg4:
A
463
G
seg4:
A
484
G
Show more
seg5
seg5:
T
46
C
seg5:
C
178
T
seg5:
A
224
G
seg5:
A
235
G
seg5:
T
298
C
seg5:
C
301
T
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
A
454
G
seg5:
C
523
T
seg5:
C
608
T
seg5:
A
634
G
seg5:
G
637
A
seg5:
T
742
C
seg5:
A
763
G
seg5:
C
841
T
Show more
seg6
seg6:
T
9
C
seg6:
C
125
A
seg6:
T
155
C
seg6:
T
212
C
seg6:
C
220
T
seg6:
C
318
A
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
C
429
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
A
557
G
seg6:
A
615
G
seg6:
A
660
C
seg6:
T
714
A
seg6:
C
849
T
seg6:
T
879
C
Show more
seg7
seg7:
C
33
T
seg7:
C
46
T
seg7:
A
83
G
seg7:
T
125
A
seg7:
A
377
G
seg7:
A
419
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
T
515
C
seg7:
G
521
A
seg7:
A
524
G
seg7:
G
536
A
seg7:
C
542
T
seg7:
A
566
G
seg7:
C
656
T
seg7:
G
668
A
seg7:
A
919
G
seg7:
C
928
T
seg7:
A
967
G
seg7:
T
1075
C
seg8
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
C
390
T
seg8:
T
391
C
seg8:
T
400
C
seg8:
C
419
T
seg8:
A
426
G
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
623
T
seg8:
C
625
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
G
685
A
seg8:
T
775
C
Show more
Deletions
seg4:562-570
Insertions
ins_seg6:0:ATGAACA
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
E
HA1:
A
159
T
HA1:
G
184
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
I
187
V
M1
M1:
T
15
I
NA
NA:
P
42
Q
NA:
L
52
S
NA:
V
71
A
NA:
L
74
F
NA:
I
120
V
NA:
K
186
R
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
I
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NEP:
V
115
I
NP
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
T
120
I
NS1:
L
130
F
NS1:
D
132
G
NS1:
P
198
S
NS1:
H
201
Y
PA
PA:
K
312
R
PA:
T
352
A
PA:
Y
458
F
PA:
S
530
T
PA:
S
547
G
PA:
F
703
L
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
L
191
M
PB1:
V
474
I
PB2
PB2:
X
303
I
PB2:
I
492
T
PB2:
X
582
E
Deletions
HA1:162-164
Insertions
None
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