GS_00H516U.1

USA/GS_00H516U.1/2026-02-12
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ048878.1.seg2/PZ048877.1.seg3/PZ048873.1.seg4/PZ048875.1.seg5/PZ048874.1.seg6/PZ048876.1.seg8
Submitting group
Date submitted
2026-02-25 04:24:31 UTC
Date released
2026-02-25 04:26:03 UTC

INSDC

Bioproject accession
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-02-24

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-02-12
Isolate name
B/California/GKISBBBH83215/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg2
2381 (100%)
Total inserted nucs seg2
23
Total SNPs seg2
55
Length seg3
2291 (100%)
Total inserted nucs seg3
46
Total SNPs seg3
51
Length seg4
1849 (98.6%)
Total deleted nucs seg4
9
Total SNPs seg4
54
Length seg5
1831 (100%)
Total inserted nucs seg5
81
Total SNPs seg5
32
Length seg6
1529 (100%)
Total inserted nucs seg6
128
Total SNPs seg6
34
Length seg8
1083 (99.6%)
Total inserted nucs seg8
21
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • seg2:G12A
  • seg2:A54G
  • seg2:G81A
  • seg2:T165C
  • seg2:T168C
  • seg2:T171C
  • seg2:T174C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C342T
  • seg2:A405G
  • seg2:G441A
  • seg2:G447A
  • seg2:G510A
  • seg2:C513T
  • seg2:A576G
  • seg2:A594G

    • seg3

  • seg3:T111C
  • seg3:C117T
  • seg3:C216T
  • seg3:T339C
  • seg3:A411G
  • seg3:G414A
  • seg3:T423C
  • seg3:A525C
  • seg3:G549A
  • seg3:A618G
  • seg3:T654C
  • seg3:A665G
  • seg3:T746C
  • seg3:A771G
  • seg3:A789G
  • seg3:C813T
  • seg3:G867A
  • seg3:C897T

    • seg4

  • seg4:C111T
  • seg4:T159C
  • seg4:C252A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T
  • seg4:T510C

    • seg5

  • seg5:C3T
  • seg5:T9C
  • seg5:T46C
  • seg5:A55G
  • seg5:C178T
  • seg5:A224G
  • seg5:G244T
  • seg5:T298C
  • seg5:C313T
  • seg5:G361A
  • seg5:A373G
  • seg5:C380T
  • seg5:A454G
  • seg5:C523T
  • seg5:C608T
  • seg5:A634G
  • seg5:A763G
  • seg5:C841T

    • seg6

  • seg6:T9C
  • seg6:C125A
  • seg6:T134C
  • seg6:G194A
  • seg6:T212C
  • seg6:C309T
  • seg6:A358G
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:C534T
  • seg6:C573A
  • seg6:A660C
  • seg6:T714A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G

    • seg8

  • seg8:G26A
  • seg8:T103C
  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:A267G
  • seg8:T341C
  • seg8:A352C
  • seg8:A374G
  • seg8:T391C
  • seg8:C419T
  • seg8:G422A
  • seg8:T577C
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G661A
  • seg8:T775C
    • Deletions
    seg4:562-570
    Insertions
    ins_seg2:0:GTTTTC, ins_seg2:2358:AATGCTCGTGTTTCTAC, ins_seg3:0:GCGTTTGATTTGTCATA, ins_seg3:2241:AGAAAC, ins_seg3:2245:ATCAAAAATGCTCGTGTTTCTAC, ins_seg5:0:GCATTTTCTTGTGAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATACAAAAAATGCTGTTGTTTCTAC, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAA...

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

    • NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

    • NEP

  • NEP:L30S
  • NEP:S93P

    • NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

    • NS1

  • NS1:K79R
  • NS1:Y104H
  • NS1:K107N
  • NS1:T115A
  • NS1:L130F
  • NS1:D131N
  • NS1:H201Y

    • PA

  • PA:N222S
  • PA:L249S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V

    • PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
    • Deletions
    HA1:162-164
    Insertions
    None