GS_00H4YL4.1

USA/GS_00H4YL4.1/2026-01-02
P. Roychoudhury, H. Xie, S. E. Ellis & A. Greninger

University of Washington Virology Lab, Laboratory Medicine and Pathology

Submission details

Submission ID
PZ048353.1.seg1/PZ048354.1.seg3/PZ048358.1.seg4/PZ048359.1.seg5/PZ048355.1.seg6/PZ048356.1.seg7/PZ048357.1.seg8
Submitting group
Date submitted
2026-02-25 04:23:13 UTC
Date released
2026-02-25 04:23:48 UTC

Clade

Clade HA
D.3.1
Clade NA
D.1

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-01-02
Isolate name
A/Washington/WA-UW-00601/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-24

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2316 (100%)
Total inserted nucs seg1
36
Total SNPs seg1
85
Length seg3
2208 (100%)
Total inserted nucs seg3
57
Total SNPs seg3
81
Length seg4
1701 (97.1%)
Total SNPs seg4
107
Length seg5
1497 (100%)
Total SNPs seg5
62
Length seg6
1433 (100%)
Total SNPs seg6
19
Length seg7
1027 (100%)
Total inserted nucs seg7
45
Total SNPs seg7
32
Length seg8
878 (100%)
Total inserted nucs seg8
15
Total SNPs seg8
35

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • seg1:A18G
  • seg1:G66A
  • seg1:A90C
  • seg1:A96G
  • seg1:A108G
  • seg1:A132G
  • seg1:A138G
  • seg1:G161A
  • seg1:A174G
  • seg1:T201C
  • seg1:A225G
  • seg1:A226T
  • seg1:C242T
  • seg1:A243G
  • seg1:C261T
  • seg1:C285A
  • seg1:A291G
  • seg1:C309T

    • seg3

  • seg3:G40A
  • seg3:R53A
  • seg3:A66G
  • seg3:T81C
  • seg3:G84C
  • seg3:A88G
  • seg3:C90T
  • seg3:C99T
  • seg3:A114T
  • seg3:C153T
  • seg3:C162T
  • seg3:C165T
  • seg3:G187A
  • seg3:G204A
  • seg3:G298A
  • seg3:G423A
  • seg3:G477A
  • seg3:G498A

    • seg4

  • seg4:C42A
  • seg4:A47G
  • seg4:G57A
  • seg4:A119G
  • seg4:T161C
  • seg4:C164T
  • seg4:G188A
  • seg4:G209A
  • seg4:A231C
  • seg4:C281A
  • seg4:C293G
  • seg4:C318T
  • seg4:G322A
  • seg4:G360A
  • seg4:G416A
  • seg4:A429G
  • seg4:C443T
  • seg4:A456G

    • seg5

  • seg5:A33G
  • seg5:G42T
  • seg5:C87T
  • seg5:A97G
  • seg5:C141A
  • seg5:C171T
  • seg5:T177C
  • seg5:C180T
  • seg5:A231G
  • seg5:C249A
  • seg5:A288C
  • seg5:G298A
  • seg5:C303T
  • seg5:G309A
  • seg5:T314C
  • seg5:G315A
  • seg5:C327T
  • seg5:R341A

    • seg6

  • seg6:C301T
  • seg6:C452A
  • seg6:G607A
  • seg6:G617T
  • seg6:C728T
  • seg6:A785G
  • seg6:T799C
  • seg6:A818G
  • seg6:C893T
  • seg6:G914T
  • seg6:A1049G
  • seg6:G1097A
  • seg6:C1187T
  • seg6:A1193G
  • seg6:A1208G
  • seg6:A1304G
  • seg6:G1365A
  • seg6:T1403C
  • seg6:G1415T

    • seg7

  • seg7:C21A
  • seg7:G48A
  • seg7:G75A
  • seg7:T123C
  • seg7:C124A
  • seg7:G238A
  • seg7:G258A
  • seg7:A293G
  • seg7:G306A
  • seg7:G339A
  • seg7:G342A
  • seg7:C375A
  • seg7:T432C
  • seg7:G441T
  • seg7:G492A
  • seg7:C507A
  • seg7:A570G
  • seg7:A574G

    • seg8

  • seg8:C6A
  • seg8:C42T
  • seg8:C54T
  • seg8:G60A
  • seg8:T99C
  • seg8:C108A
  • seg8:T159C
  • seg8:G163A
  • seg8:C192T
  • seg8:C204T
  • seg8:A238G
  • seg8:G250A
  • seg8:C264T
  • seg8:C268A
  • seg8:C315T
  • seg8:A367G
  • seg8:A375T
  • seg8:A391G
    • Deletions
    None
    Insertions
    ins_seg1:0:TCAAATATATTCAAT, ins_seg1:2280:TGTCGAATTGTTTAAAAACGA, ins_seg3:0:TACTGATCCAAA, ins_seg3:2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA, ins_seg7:0:AGCAAAAGCAGGTAGATGTTTAAAG, ins_seg7:982:AAAACTACCTTGTTTCTACT, ins_seg8:0:GTGACAAAAACATA, ins_seg8:863:T

    Amino acid mutations

    Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

    Substitutions

    HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P
  • HA1:S185I
  • HA1:A186T

    • HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

    • M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

    • M2

  • M2:R18K
  • M2:D21G
  • M2:S23N
  • M2:I28T
  • M2:R54H

    • NA

  • NA:A98V
  • NA:S200N
  • NA:I264T
  • NA:V453M
  • NA:K469N

    • NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

    • NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

    • NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S
  • NS1:K219E

    • PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

    • PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:L201S
  • PA-X:N204S
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

    • PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:K187R
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

    • SigPep

  • SigPep:L8M
  • SigPep:A13T
    • Deletions
    None
    Insertions
    None