GS_00H4VP1.1

Bangladesh/GS_00H4VP1.1/2024-10-31
M. S. Aung & N. Kobayashi

Sapporo Medical University, Hygiene

Submission details

Submission ID
PZ017439.1
Submitting group
Date submitted
2026-02-25 04:10:43 UTC
Date released
2026-02-25 04:11:39 UTC

Clade & Lineage

Clade
3I_A.2

Sample details

Collection country
Bangladesh
Collection date
2024-10-31
Isolate name
MMC42-2024

Host

Host

INSDC

INSDC accession
NCBI release date
2026-02-24
NCBI update date
2026-02-24

Alignment and QC

Length
2024 (18.9%)
Total SNPs
165

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • C364T
  • A376T
  • C383A
  • A384G
  • G400A
  • A418G
  • G421A
  • G428A
  • C439T
  • T496A
  • T557C
  • G565A
  • C577T
  • A600T
  • T604C
  • C607T
  • A616G
  • C625T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001475.2 reference

Substitutions

C

  • C:Q97R
  • C:I108M
  • C:A112T

E

  • E:I68V
  • E:V81I
  • E:P124L
  • E:Y132H
  • E:T169V
  • E:A219T
  • E:T223I
  • E:R231K
  • E:N270T
  • E:T301S
  • E:T303A
  • E:P362L
  • E:V377I
  • E:N383K
  • E:E404A
  • E:V452I
  • E:V459I
  • E:A479V

prM

  • prM:H55L
  • prM:T107A
  • prM:V120I
  • prM:L128F
Deletions
N/A
Insertions
N/A