GS_00H4T80.1

USA/GS_00H4T80.1/2026-02-03
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ035240.1.seg1/PZ035239.1.seg2/PZ035238.1.seg3/PZ035233.1.seg4/PZ035236.1.seg5/PZ035235.1.seg6/PZ035234.1.seg7/PZ035237.1.seg8
Submitting group
Date submitted
2026-02-24 06:14:09 UTC
Date released
2026-02-24 06:15:53 UTC

Clade

Clade HA
D.3.1
Clade NA
D.2

Sample details

Collection country
USA
Collection subdivision level 1
South Carolina
Collection date
2026-02-03
Isolate name
A/South Carolina/USAFSAM-16933/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-23

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2280 (100%)
Total SNPs seg1
88
Length seg2
2274 (100%)
Total SNPs seg2
72
Length seg3
2151 (100%)
Total SNPs seg3
83
Length seg4
1701 (97.1%)
Total SNPs seg4
103
Length seg5
1497 (100%)
Total SNPs seg5
61
Length seg6
1410 (98.4%)
Total SNPs seg6
20
Length seg7
982 (100%)
Total SNPs seg7
27
Length seg8
838 (97.1%)
Total SNPs seg8
37

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • seg1:A18G
  • seg1:A90C
  • seg1:A96G
  • seg1:A108G
  • seg1:A138G
  • seg1:G144A
  • seg1:G161A
  • seg1:A174G
  • seg1:G198A
  • seg1:T201C
  • seg1:A225G
  • seg1:C242T
  • seg1:A243G
  • seg1:C285A
  • seg1:A291G
  • seg1:C309T
  • seg1:G375A
  • seg1:C399T

    • seg2

  • seg2:G42A
  • seg2:A159G
  • seg2:G168A
  • seg2:G180A
  • seg2:C192T
  • seg2:T207A
  • seg2:T210C
  • seg2:T222C
  • seg2:G225A
  • seg2:T231C
  • seg2:C297T
  • seg2:G312A
  • seg2:A345G
  • seg2:A366G
  • seg2:T384C
  • seg2:T397C
  • seg2:C447T
  • seg2:T450C

    • seg3

  • seg3:G40A
  • seg3:R53A
  • seg3:T81C
  • seg3:G84C
  • seg3:A88G
  • seg3:C90T
  • seg3:C99T
  • seg3:A114T
  • seg3:G126A
  • seg3:C153T
  • seg3:C162T
  • seg3:C165T
  • seg3:G187A
  • seg3:G204A
  • seg3:G270A
  • seg3:G298A
  • seg3:G423A
  • seg3:G477A

    • seg4

  • seg4:C42A
  • seg4:A47G
  • seg4:G57A
  • seg4:A119G
  • seg4:T161C
  • seg4:C164T
  • seg4:G188A
  • seg4:A231C
  • seg4:C293G
  • seg4:C318T
  • seg4:G322A
  • seg4:G360A
  • seg4:A408C
  • seg4:G416A
  • seg4:A429G
  • seg4:C443T
  • seg4:A456G
  • seg4:A461T

    • seg5

  • seg5:A33G
  • seg5:G42T
  • seg5:C87T
  • seg5:A97G
  • seg5:C141A
  • seg5:C171T
  • seg5:T177C
  • seg5:C180T
  • seg5:C249A
  • seg5:A288C
  • seg5:G298A
  • seg5:G309A
  • seg5:T314C
  • seg5:G315A
  • seg5:R341A
  • seg5:T365A
  • seg5:A390G
  • seg5:T402C

    • seg6

  • seg6:T50C
  • seg6:A144G
  • seg6:G163A
  • seg6:T188C
  • seg6:C434T
  • seg6:C452A
  • seg6:G607A
  • seg6:A785G
  • seg6:T799C
  • seg6:A818G
  • seg6:C831T
  • seg6:C893T
  • seg6:G914T
  • seg6:T1016C
  • seg6:A1049G
  • seg6:C1187T
  • seg6:A1193G
  • seg6:G1365A
  • seg6:T1403C
  • seg6:G1415T

    • seg7

  • seg7:T36C
  • seg7:G75A
  • seg7:C124A
  • seg7:G238A
  • seg7:G258A
  • seg7:A293G
  • seg7:G306A
  • seg7:G339A
  • seg7:C375A
  • seg7:T432C
  • seg7:G441T
  • seg7:T465C
  • seg7:G492A
  • seg7:C507A
  • seg7:A574G
  • seg7:G600A
  • seg7:C622A
  • seg7:G660A

    • seg8

  • seg8:C6A
  • seg8:C42T
  • seg8:C54T
  • seg8:C57T
  • seg8:C68T
  • seg8:T99C
  • seg8:C108A
  • seg8:T150A
  • seg8:C153T
  • seg8:T159C
  • seg8:G163A
  • seg8:C192T
  • seg8:C204T
  • seg8:A238G
  • seg8:G250A
  • seg8:C264T
  • seg8:C268A
  • seg8:C315T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

    Substitutions

    HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P
  • HA1:S185I
  • HA1:A186T

    • HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

    • M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

    • M2

  • M2:D21G
  • M2:S23N

    • NA

  • NA:I46V
  • NA:S52N
  • NA:S200N
  • NA:I264T
  • NA:H275Y
  • NA:V453M
  • NA:K469N

    • NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

    • NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:N377S
  • NP:V425I
  • NP:S498N

    • NS1

  • NS1:D2E
  • NS1:A23V
  • NS1:E55K
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S

    • PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

    • PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:N204S
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

    • PB1

  • PB1:G154D
  • PB1:V200I
  • PB1:K386R
  • PB1:I397M
  • PB1:V418I
  • PB1:I435T
  • PB1:K737R
  • PB1:K757R

    • PB2

  • PB2:R54K
  • PB2:M66I
  • PB2:T81M
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:T524A
  • PB2:V667I
  • PB2:V731I

    • SigPep

  • SigPep:L8M
  • SigPep:A13T
    • Deletions
    None
    Insertions
    None