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Influenza A/H3N2
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GS_00H4QGM.1
Download
Download FASTA
Download metadata TSV
USA/GS_00H4QGM.1/2026-01-29
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ029138.1.seg1/PZ029139.1.seg2/PZ029140.1.seg3/PZ029141.1.seg4/PZ029142.1.seg5/PZ029143.1.seg6/PZ029144.1.seg7/PZ029145.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-24 06:12:05 UTC
Date released
2026-02-24 06:13:33 UTC
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-01-29
Isolate name
A/California/LACPHL-INF02236/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ029138.1
INSDC accession seg2
PZ029139.1
INSDC accession seg3
PZ029140.1
INSDC accession seg4
PZ029141.1
INSDC accession seg5
PZ029142.1
INSDC accession seg6
PZ029143.1
INSDC accession seg7
PZ029144.1
INSDC accession seg8
PZ029145.1
NCBI release date
2026-02-23
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
105
Length seg2
2274 (97.1%)
Total SNPs seg2
109
Length seg3
2151 (96.3%)
Total SNPs seg3
88
Length seg4
1701 (97.8%)
Total ambiguous nucs seg4
2
Total SNPs seg4
123
Length seg5
1497 (95.6%)
Total SNPs seg5
55
Length seg6
1410 (98%)
Total SNPs seg6
19
Length seg7
982 (95.6%)
Total SNPs seg7
28
Length seg8
863 (97%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
C
54
T
seg1:
G
57
A
seg1:
T
75
C
seg1:
G
87
A
seg1:
C
192
T
seg1:
C
198
T
seg1:
T
255
C
seg1:
T
264
C
seg1:
A
282
G
seg1:
C
289
A
seg1:
A
291
G
seg1:
A
336
G
seg1:
G
343
A
seg1:
G
347
A
seg1:
A
369
G
seg1:
G
375
A
seg1:
A
402
G
seg1:
T
417
C
Show more
seg2
seg2:
C
46
T
seg2:
G
57
A
seg2:
C
84
A
seg2:
A
129
G
seg2:
A
132
T
seg2:
A
135
G
seg2:
C
141
T
seg2:
T
171
C
seg2:
A
179
G
seg2:
G
180
A
seg2:
A
213
T
seg2:
A
219
G
seg2:
G
258
A
seg2:
C
282
T
seg2:
C
306
T
seg2:
T
327
C
seg2:
G
336
A
seg2:
A
342
T
Show more
seg3
seg3:
A
99
G
seg3:
A
120
C
seg3:
C
144
T
seg3:
A
156
G
seg3:
T
174
C
seg3:
T
177
C
seg3:
G
210
A
seg3:
T
222
C
seg3:
G
243
A
seg3:
A
324
T
seg3:
A
333
G
seg3:
C
340
T
seg3:
A
342
G
seg3:
A
345
G
seg3:
G
363
A
seg3:
T
369
C
seg3:
A
396
G
seg3:
A
435
G
Show more
seg4
seg4:
A
24
G
seg4:
T
42
A
seg4:
G
56
T
seg4:
A
71
C
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
G
155
A
seg4:
A
163
G
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
seg4:
G
213
A
seg4:
G
214
A
seg4:
G
222
A
seg4:
A
250
G
Show more
seg5
seg5:
G
81
A
seg5:
G
96
A
seg5:
T
180
G
seg5:
G
207
A
seg5:
G
219
A
seg5:
G
237
A
seg5:
C
249
T
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
A
582
C
Show more
seg6
seg6:
C
10
G
seg6:
C
11
A
seg6:
A
13
T
seg6:
A
14
C
seg6:
T
15
C
seg6:
C
16
A
seg6:
A
19
T
seg6:
A
20
C
seg6:
G
21
A
seg6:
T
23
A
seg6:
A
25
G
seg6:
T
26
A
seg6:
A
27
T
seg6:
C
29
A
seg6:
G
30
T
seg6:
T
32
A
seg6:
T
33
C
seg6:
G
35
A
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
664
T
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
Show more
seg8
seg8:
C
53
T
seg8:
G
83
A
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
T
271
C
seg8:
C
275
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
A
418
G
seg8:
G
430
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
K
199
R
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
P
453
S
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
K
131
R
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
Y
277
C
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
E
383
D
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
None
Insertions
None
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