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GS_00H4M5C.1
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Download FASTA
Download metadata TSV
USA/GS_00H4M5C.1/2026-01-06
K. Lantz &
T. Stuber
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
Submission details
Submission ID
PZ032170.1.seg1/PZ032171.1.seg2/PZ032172.1.seg3/PZ032173.1.seg4/PZ032174.1.seg5/PZ032175.1.seg6/PZ032176.1.seg7/PZ032177.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-24 06:00:12 UTC
Date released
2026-02-24 06:08:16 UTC
INSDC
Bioproject accession
PRJNA980729
Biosample accession
SAMN54774746
INSDC accession seg1
PZ032170.1
INSDC accession seg2
PZ032171.1
INSDC accession seg3
PZ032172.1
INSDC accession seg4
PZ032173.1
INSDC accession seg5
PZ032174.1
INSDC accession seg6
PZ032175.1
INSDC accession seg7
PZ032176.1
INSDC accession seg8
PZ032177.1
NCBI release date
2026-02-23
SRA run accession
SRR36933500
Clade
Clade
2.3.4.4b
Sample details
Collection country
USA
Collection subdivision level 1
PA
Collection date
2026-01-06
Isolate name
A/chicken/PA/26G00304-007-original/2026
Host
Host
Gallus gallus
INSDC seg4
Subtype seg4
H5
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
374
Length seg2
2274 (97.1%)
Total SNPs seg2
216
Length seg3
2151 (96.3%)
Total SNPs seg3
245
Length seg4
1704 (97%)
Total deleted nucs seg4
3
Total SNPs seg4
175
Length seg5
1497 (95.7%)
Total SNPs seg5
183
Length seg6
1410 (96.7%)
Total SNPs seg6
211
Length seg7
982 (95.6%)
Total SNPs seg7
61
Length seg8
838 (96.9%)
Frame shifts seg8
NS1:23-26(nt:80-92),NS1:70-72(nt:221-230)
Total deleted nucs seg8
6
Total frame shifts seg8
2
Total inserted nucs seg8
6
Total SNPs seg8
244
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
seg1:
A
33
G
seg1:
A
48
G
seg1:
G
63
A
seg1:
C
69
T
seg1:
A
90
C
seg1:
G
102
T
seg1:
T
105
C
seg1:
T
108
C
seg1:
A
126
G
seg1:
A
141
G
seg1:
G
147
A
seg1:
T
159
A
seg1:
A
165
G
seg1:
T
192
C
seg1:
A
211
C
seg1:
G
222
A
seg1:
T
228
C
seg1:
G
237
A
Show more
seg2
seg2:
A
70
G
seg2:
T
75
C
seg2:
T
96
C
seg2:
A
129
G
seg2:
C
141
A
seg2:
T
171
C
seg2:
G
183
A
seg2:
G
195
A
seg2:
G
204
A
seg2:
T
207
C
seg2:
C
216
T
seg2:
T
225
C
seg2:
G
228
A
seg2:
A
237
G
seg2:
G
250
A
seg2:
T
252
C
seg2:
T
255
C
seg2:
G
258
A
Show more
seg3
seg3:
T
63
C
seg3:
G
120
T
seg3:
A
126
G
seg3:
T
129
C
seg3:
C
132
T
seg3:
G
144
T
seg3:
C
147
T
seg3:
A
150
G
seg3:
A
171
G
seg3:
C
180
T
seg3:
T
183
C
seg3:
C
206
T
seg3:
A
211
G
seg3:
A
213
G
seg3:
C
228
A
seg3:
T
235
C
seg3:
T
238
C
seg3:
A
243
G
Show more
seg4
seg4:
G
27
A
seg4:
A
30
C
seg4:
G
36
A
seg4:
G
52
A
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
C
102
T
seg4:
A
123
G
seg4:
A
132
G
seg4:
T
141
C
seg4:
T
144
C
seg4:
G
174
A
seg4:
A
175
G
seg4:
T
183
C
seg4:
C
195
T
seg4:
A
207
G
seg4:
C
219
G
Show more
seg5
seg5:
G
57
A
seg5:
T
72
C
seg5:
G
81
A
seg5:
A
96
G
seg5:
T
111
C
seg5:
G
117
A
seg5:
T
147
C
seg5:
T
153
C
seg5:
G
159
A
seg5:
T
162
C
seg5:
T
165
C
seg5:
A
183
G
seg5:
A
189
G
seg5:
C
195
T
seg5:
C
198
T
seg5:
T
201
C
seg5:
A
207
G
seg5:
T
216
C
Show more
seg6
seg6:
G
35
A
seg6:
C
46
A
seg6:
C
47
T
seg6:
T
50
C
seg6:
A
53
G
seg6:
T
62
C
seg6:
G
69
A
seg6:
G
74
A
seg6:
A
78
C
seg6:
T
80
A
seg6:
C
83
T
seg6:
T
84
C
seg6:
T
90
C
seg6:
G
101
A
seg6:
A
116
C
seg6:
C
122
T
seg6:
G
124
A
seg6:
G
137
A
Show more
seg7
seg7:
G
112
A
seg7:
C
142
T
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
seg7:
A
322
G
seg7:
A
327
G
seg7:
G
331
A
seg7:
C
332
T
seg7:
A
337
G
seg7:
A
343
G
Show more
seg8
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
T
56
C
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
Show more
Deletions
seg4:1054-1056, seg8:90, seg8:93, seg8:231-234
Insertions
ins_seg8:79:TG, ins_seg8:220:AGAA
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
V
11
I
HA:
T
52
A
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
H
154
Q
HA:
R
156
A
Show more
M1
M1:
K
101
R
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
E
14
G
M2:
K
18
N
M2:
V
28
I
M2:
I
51
V
M2:
V
86
A
NA
NA:
T
9
N
NA:
V
17
I
NA:
I
20
L
NA:
S
35
N
NA:
Q
43
P
NA:
H
44
N
NA:
Q
45
H
NA:
A
46
P
NA:
P
48
T
NA:
I
53
V
NA:
V
67
I
NA:
F
74
L
NA:
L
75
I
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
D
NA:
S
82
P
NA:
T
84
A
Show more
NP
NP:
V
105
I
NP:
N
125
D
NP:
M
136
L
NP:
M
163
T
NP:
M
239
V
NP:
A
353
V
NP:
S
377
N
NP:
S
450
N
NP:
S
451
A
NS1
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
C
28
G
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
T
NS1:
M
59
R
NS1:
E
60
A
NS1:
K
63
Q
NS1:
D
67
R
NS1:
E
75
G
Show more
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
E
36
K
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
M
50
I
NS2:
N
60
S
NS2:
A
63
E
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
Show more
PA
PA:
T
61
I
PA:
I
63
V
PA:
T
129
I
PA:
K
139
R
PA:
V
201
I
PA:
C
212
R
PA:
D
216
N
PA:
K
228
N
PA:
E
237
K
PA:
K
262
E
PA:
R
269
K
PA:
I
322
V
PA:
V
323
I
PA:
L
336
Q
PA:
I
348
L
PA:
R
361
K
PA:
S
388
G
PA:
R
391
K
Show more
PAX
PAX:
T
61
I
PAX:
I
63
V
PAX:
T
129
I
PAX:
K
139
R
PAX:
R
195
K
PAX:
G
209
E
PAX:
L
210
P
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
P
PB1
PB1:
N
16
D
PB1:
D
76
N
PB1:
K
134
N
PB1:
G
154
S
PB1:
E
172
D
PB1:
G
177
E
PB1:
I
182
T
PB1:
K
207
R
PB1:
S
375
N
PB1:
R
430
K
PB1:
N
455
D
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
P
598
L
Show more
PB2
PB2:
Q
73
H
PB2:
D
195
E
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
G
PB2:
R
389
K
PB2:
A
471
T
PB2:
V
478
I
PB2:
Q
508
R
PB2:
S
579
P
PB2:
A
588
S
PB2:
S
590
G
PB2:
P
628
Q
PB2:
T
637
I
PB2:
V
638
M
PB2:
A
674
V
PB2:
R
699
K
PB2:
M
727
G
PB2:
F
741
S
Deletions
HA:344, NS1:27, NS1:73, NS1:74
Insertions
None
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