GS_00H3Q77.1

USA/GS_00H3Q77.1/2026-01-29
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ019822.1.seg1/PZ019821.1.seg2/PZ019823.1.seg4/PZ019819.1.seg5/PZ019824.1.seg6/PZ019818.1.seg7/PZ019820.1.seg8
Submitting group
Date submitted
2026-02-22 05:55:43 UTC
Date released
2026-02-22 05:57:24 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-19

Clade

Clade HA
D.3.1
Clade NA
D.1

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-01-29
Isolate name
A/Washington/GKISBBBH72189/2026

Host

Host

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2318 (100%)
Total inserted nucs seg1
38
Total SNPs seg1
91
Length seg2
2316 (100%)
Total inserted nucs seg2
42
Total SNPs seg2
75
Length seg4
1745 (99.6%)
Total SNPs seg4
109
Length seg5
1542 (100%)
Total inserted nucs seg5
45
Total SNPs seg5
61
Length seg6
1416 (98.8%)
Total SNPs seg6
25
Length seg7
1004 (100%)
Total inserted nucs seg7
22
Total SNPs seg7
33
Length seg8
874 (99.7%)
Total inserted nucs seg8
14
Total SNPs seg8
33

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • seg1:A18G
  • seg1:G66A
  • seg1:G85A
  • seg1:A90C
  • seg1:A96G
  • seg1:A108G
  • seg1:A132G
  • seg1:A138G
  • seg1:G161A
  • seg1:A174G
  • seg1:T201C
  • seg1:A225G
  • seg1:A226T
  • seg1:C231T
  • seg1:C242T
  • seg1:A243G
  • seg1:C261T
  • seg1:C285A

    • seg2

  • seg2:G42A
  • seg2:A159G
  • seg2:G168A
  • seg2:G180A
  • seg2:C192T
  • seg2:C201T
  • seg2:T207A
  • seg2:T210C
  • seg2:T222C
  • seg2:G225A
  • seg2:T228C
  • seg2:C297T
  • seg2:G312A
  • seg2:T324A
  • seg2:G354A
  • seg2:A366G
  • seg2:C447T
  • seg2:T450C

    • seg4

  • seg4:C42A
  • seg4:A47G
  • seg4:G57A
  • seg4:A119G
  • seg4:T161C
  • seg4:C164T
  • seg4:G188A
  • seg4:G209A
  • seg4:A231C
  • seg4:C281A
  • seg4:C293G
  • seg4:C318T
  • seg4:G322A
  • seg4:G360A
  • seg4:G416A
  • seg4:A429G
  • seg4:C443T
  • seg4:A456G

    • seg5

  • seg5:A33G
  • seg5:G42T
  • seg5:C87T
  • seg5:A97G
  • seg5:C141A
  • seg5:C171T
  • seg5:T177C
  • seg5:C180T
  • seg5:C249A
  • seg5:A288C
  • seg5:G298A
  • seg5:C303T
  • seg5:G309A
  • seg5:T314C
  • seg5:G315A
  • seg5:R341A
  • seg5:T365A
  • seg5:A390G

    • seg6

  • seg6:G257A
  • seg6:C301T
  • seg6:T302C
  • seg6:C407T
  • seg6:C452A
  • seg6:A515G
  • seg6:C539T
  • seg6:G607A
  • seg6:A785G
  • seg6:T799C
  • seg6:A818G
  • seg6:T890C
  • seg6:C893T
  • seg6:G914T
  • seg6:C929T
  • seg6:A1049G
  • seg6:C1187T
  • seg6:A1193G

    • seg7

  • seg7:G48A
  • seg7:G75A
  • seg7:T123C
  • seg7:C124A
  • seg7:A159G
  • seg7:G238A
  • seg7:G258A
  • seg7:A293G
  • seg7:C295T
  • seg7:G306A
  • seg7:G339A
  • seg7:G342A
  • seg7:C375A
  • seg7:T432C
  • seg7:G441T
  • seg7:G492A
  • seg7:T501C
  • seg7:C507A

    • seg8

  • seg8:C6A
  • seg8:C42T
  • seg8:C54T
  • seg8:G60A
  • seg8:T99C
  • seg8:C108A
  • seg8:T159C
  • seg8:G163A
  • seg8:C192T
  • seg8:C204T
  • seg8:A238G
  • seg8:G250A
  • seg8:C264T
  • seg8:C268A
  • seg8:C315T
  • seg8:A367G
  • seg8:A375T
  • seg8:A391G
    • Deletions
    None
    Insertions
    ins_seg1:0:GGTCAAATATATTCAAT, ins_seg1:2280:TGTTGAATTGTTTAAAAACGA, ins_seg2:0:CAAACCATTTGA, ins_seg2:2274:TGAATTTAACTTGTCCTTCATGAAAAAATG, ins_seg5:0:GGGTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_seg5:1497:AGAAAAATAC, ins_seg7:0:GGTAGATGTTTAAAG, ins_seg7:982:AAAACTA, ins_seg8:0:GTGACAAAAACATA

    Amino acid mutations

    Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

    Substitutions

    HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P
  • HA1:S185I
  • HA1:A186T

    • HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

    • M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

    • M2

  • M2:R18K
  • M2:D21G
  • M2:S23N
  • M2:I28T

    • NA

  • NA:A98V
  • NA:S200N
  • NA:I264T
  • NA:V453M
  • NA:K469N

    • NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

    • NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

    • NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S

    • PB1

  • PB1:G154D
  • PB1:V200I
  • PB1:K386R
  • PB1:I397M
  • PB1:I435T
  • PB1:P454S
  • PB1:D729E
  • PB1:K757R

    • PB2

  • PB2:A29T
  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:S107N
  • PB2:A184T
  • PB2:K187R
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:I478V
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

    • SigPep

  • SigPep:L8M
  • SigPep:A13T
    • Deletions
    None
    Insertions
    None