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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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GS_00H3PT1.1
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Download FASTA
Download metadata TSV
USA/GS_00H3PT1.1/2026-01-13
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ010861.1.seg1/PZ010862.1.seg2/PZ010863.1.seg4/PZ010864.1.seg5/PZ010865.1.seg6/PZ010866.1.seg7/PZ010867.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-22 05:55:43 UTC
Date released
2026-02-22 05:57:24 UTC
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-01-13
Isolate name
A/California/LACPHL-INF02225/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ010861.1
INSDC accession seg2
PZ010862.1
INSDC accession seg4
PZ010863.1
INSDC accession seg5
PZ010864.1
INSDC accession seg6
PZ010865.1
INSDC accession seg7
PZ010866.1
INSDC accession seg8
PZ010867.1
NCBI release date
2026-02-17
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
85
Length seg2
2274 (95.1%)
Total SNPs seg2
68
Total unknown nucs seg2
111
Length seg4
1701 (97.1%)
Total SNPs seg4
108
Length seg5
1497 (100%)
Total SNPs seg5
61
Length seg6
1410 (98.4%)
Total SNPs seg6
22
Length seg7
982 (100%)
Total SNPs seg7
25
Length seg8
863 (100%)
Total SNPs seg8
36
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
A
18
G
seg1:
A
90
C
seg1:
A
96
G
seg1:
A
108
G
seg1:
A
132
G
seg1:
A
138
G
seg1:
G
161
A
seg1:
A
174
G
seg1:
G
198
A
seg1:
T
201
C
seg1:
A
225
G
seg1:
C
242
T
seg1:
A
243
G
seg1:
A
273
G
seg1:
C
285
A
seg1:
C
309
T
seg1:
G
375
A
seg1:
G
583
A
Show more
seg2
seg2:
G
42
A
seg2:
A
159
G
seg2:
G
168
A
seg2:
G
180
A
seg2:
C
192
T
seg2:
T
207
A
seg2:
T
210
C
seg2:
T
222
C
seg2:
G
225
A
seg2:
T
231
C
seg2:
C
297
T
seg2:
G
312
A
seg2:
A
345
G
seg2:
A
366
G
seg2:
T
384
C
seg2:
T
397
C
seg2:
C
447
T
seg2:
T
450
C
Show more
seg4
seg4:
G
36
A
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
A
408
C
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
seg4:
A
456
G
Show more
seg5
seg5:
A
33
G
seg5:
G
42
T
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
G
195
A
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
Show more
seg6
seg6:
T
50
C
seg6:
A
89
G
seg6:
A
144
G
seg6:
G
163
A
seg6:
C
452
A
seg6:
C
467
T
seg6:
G
607
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
A
911
G
seg6:
G
914
T
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1100
T
seg6:
C
1187
T
seg6:
A
1193
G
Show more
seg7
seg7:
G
75
A
seg7:
G
89
T
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
T
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
G
600
A
seg7:
C
622
A
seg7:
G
660
A
seg7:
T
663
C
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
C
57
T
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
150
A
seg8:
C
153
T
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
G
363
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
S
30
I
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
I
46
V
NA:
S
52
N
NA:
S
200
N
NA:
I
264
T
NA:
I
396
M
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
N
377
S
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PB1
PB1:
G
154
D
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
V
640
I
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
M
66
I
PB2:
T
81
M
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
D
441
N
PB2:
S
453
T
PB2:
L
475
M
PB2:
T
524
A
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
V
6
I
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
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