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Influenza A/H1N1pdm
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GS_00H3PR5.1
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USA/GS_00H3PR5.1/2025-12-23
M. Aufderhar,
K. Franzen,
M. L. Killian,
K. Lantz,
T. Stuber,
J. Hicks &
S. Lakin
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
Submission details
Submission ID
PZ010335.1.seg1/PZ010336.1.seg2/PZ010337.1.seg3/PZ010338.1.seg4/PZ010339.1.seg5/PZ010340.1.seg6/PZ010341.1.seg7/PZ010342.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-22 05:55:43 UTC
Date released
2026-02-22 05:57:24 UTC
INSDC
Bioproject accession
PRJNA1230736
Biosample accession
SAMN54681070
INSDC accession seg1
PZ010335.1
INSDC accession seg2
PZ010336.1
INSDC accession seg3
PZ010337.1
INSDC accession seg4
PZ010338.1
INSDC accession seg5
PZ010339.1
INSDC accession seg6
PZ010340.1
INSDC accession seg7
PZ010341.1
INSDC accession seg8
PZ010342.1
NCBI release date
2026-02-17
SRA run accession
SRR36855868
Clade
Clade HA
D
Clade NA
C.5.1.1
Sample details
Collection country
USA
Collection subdivision level 1
MN
Collection date
2025-12-23
Isolate name
A/Turkey/MN/26G00031-002-original/2025
Host
Host
Meleagris gallopavo
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
162
Length seg2
2274 (100%)
Total SNPs seg2
188
Length seg3
2151 (100%)
Total SNPs seg3
179
Length seg4
1701 (97.1%)
Total SNPs seg4
109
Length seg5
1497 (100%)
Total SNPs seg5
50
Length seg6
1410 (98.4%)
Total SNPs seg6
29
Length seg7
982 (100%)
Total SNPs seg7
28
Length seg8
838 (97.1%)
Total SNPs seg8
61
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
G
21
A
seg1:
G
99
A
seg1:
A
105
T
seg1:
A
117
G
seg1:
G
161
A
seg1:
A
177
G
seg1:
A
182
G
seg1:
T
201
C
seg1:
G
207
A
seg1:
A
219
G
seg1:
A
222
G
seg1:
A
240
G
seg1:
A
264
T
seg1:
G
267
A
seg1:
T
279
C
seg1:
A
288
G
seg1:
G
303
A
seg1:
C
309
A
Show more
seg2
seg2:
T
18
C
seg2:
C
19
T
seg2:
A
33
G
seg2:
A
34
G
seg2:
G
42
A
seg2:
A
45
G
seg2:
T
81
C
seg2:
A
129
C
seg2:
C
147
T
seg2:
A
155
G
seg2:
G
156
A
seg2:
A
159
G
seg2:
G
162
A
seg2:
G
168
A
seg2:
C
174
T
seg2:
T
186
G
seg2:
C
201
T
seg2:
C
217
T
Show more
seg3
seg3:
A
21
G
seg3:
C
27
T
seg3:
R
53
A
seg3:
C
82
T
seg3:
A
87
G
seg3:
A
88
G
seg3:
T
96
C
seg3:
T
105
C
seg3:
A
120
G
seg3:
T
123
C
seg3:
T
132
C
seg3:
T
150
C
seg3:
G
170
A
seg3:
G
175
C
seg3:
A
183
C
seg3:
C
201
T
seg3:
G
204
A
seg3:
C
211
T
Show more
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
T
56
C
seg4:
G
57
A
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
G
228
A
seg4:
A
231
C
seg4:
T
236
C
seg4:
C
248
T
seg4:
C
255
T
seg4:
G
292
A
seg4:
C
293
A
seg4:
T
294
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
Show more
seg5
seg5:
A
24
G
seg5:
T
30
C
seg5:
A
72
G
seg5:
A
78
G
seg5:
T
159
A
seg5:
A
300
T
seg5:
T
326
C
seg5:
R
341
A
seg5:
A
345
C
seg5:
T
365
A
seg5:
A
441
C
seg5:
G
459
A
seg5:
A
486
G
seg5:
A
504
G
seg5:
T
543
A
seg5:
A
561
G
seg5:
G
568
A
seg5:
A
570
G
Show more
seg6
seg6:
C
47
T
seg6:
A
156
G
seg6:
C
223
T
seg6:
C
275
T
seg6:
T
335
C
seg6:
T
353
C
seg6:
C
452
A
seg6:
C
569
T
seg6:
C
773
T
seg6:
A
785
G
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
905
T
seg6:
G
914
T
seg6:
G
1025
A
seg6:
G
1153
A
seg6:
A
1164
G
seg6:
A
1177
G
Show more
seg7
seg7:
C
45
A
seg7:
A
87
G
seg7:
C
108
T
seg7:
T
114
C
seg7:
C
163
T
seg7:
T
168
C
seg7:
A
180
G
seg7:
A
252
G
seg7:
T
261
C
seg7:
G
270
A
seg7:
G
324
A
seg7:
G
333
T
seg7:
G
414
T
seg7:
T
501
A
seg7:
A
528
G
seg7:
T
642
C
seg7:
T
666
C
seg7:
C
672
T
Show more
seg8
seg8:
C
12
T
seg8:
C
15
T
seg8:
A
16
G
seg8:
T
51
C
seg8:
G
60
A
seg8:
A
63
G
seg8:
C
96
T
seg8:
A
114
G
seg8:
T
127
C
seg8:
A
129
G
seg8:
A
131
T
seg8:
G
133
A
seg8:
G
151
A
seg8:
G
152
A
seg8:
T
159
C
seg8:
C
192
T
seg8:
T
194
C
seg8:
G
195
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
G
53
S
HA1:
K
54
Q
HA1:
S
74
K
HA1:
S
75
A
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
N
129
D
HA1:
P
137
S
HA1:
N
156
Q
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
M
HA1:
A
186
T
HA1:
Q
189
E
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
K
116
E
HA2:
S
124
H
HA2:
E
172
K
HA2:
E
179
D
M1
M1:
A
227
T
M2
M2:
T
11
I
M2:
D
21
V
M2:
S
22
L
M2:
V
27
A
NA
NA:
N
50
D
NA:
T
72
I
NA:
G
382
E
NA:
K
386
E
NA:
K
390
R
NA:
E
432
K
NA:
D
451
G
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
M
6
V
NEP:
S
37
A
NEP:
V
49
I
NEP:
S
60
K
NEP:
M
83
V
NEP:
A
115
T
NP
NP:
D
53
E
NP:
I
109
T
NP:
X
114
E
NP:
E
115
D
NP:
L
122
Q
NP:
A
190
T
NP:
S
344
T
NP:
N
377
S
NP:
V
444
I
NP:
K
452
R
NP:
N
473
S
NS1
NS1:
M
6
V
NS1:
K
44
I
NS1:
G
45
R
NS1:
G
51
N
NS1:
V
65
A
NS1:
E
75
D
NS1:
L
77
I
NS1:
R
78
K
NS1:
S
87
P
NS1:
S
91
A
NS1:
R
108
K
NS1:
L
115
F
NS1:
L
119
M
NS1:
M
124
L
NS1:
V
129
I
NS1:
V
157
I
NS1:
Y
171
N
NS1:
V
178
I
Show more
PA
PA:
X
18
E
PA:
P
28
S
PA:
I
30
V
PA:
R
57
Q
PA:
E
59
Q
PA:
I
85
T
PA:
M
86
V
PA:
I
118
V
PA:
S
186
G
PA:
K
204
R
PA:
K
213
R
PA:
P
224
S
PA:
N
254
S
PA:
K
256
R
PA:
R
262
K
PA:
T
263
K
PA:
H
277
S
PA:
V
323
I
Show more
PA-X
PA-X:
X
18
E
PA-X:
P
28
S
PA-X:
I
30
V
PA-X:
R
57
Q
PA-X:
E
59
Q
PA-X:
I
85
T
PA-X:
M
86
V
PA-X:
I
118
V
PA-X:
S
186
G
PA-X:
S
193
N
PA-X:
K
195
R
PA-X:
L
201
S
PA-X:
N
204
D
PA-X:
R
206
K
PA-X:
L
210
P
PA-X:
A
212
V
PA-X:
S
213
G
PA-X:
P
215
Q
PA-X:
A
225
V
PA-X:
*
233
W
PB1
PB1:
I
12
V
PB1:
K
52
R
PB1:
V
113
I
PB1:
N
175
D
PB1:
L
212
M
PB1:
G
216
S
PB1:
I
298
L
PB1:
R
361
K
PB1:
I
364
L
PB1:
A
374
S
PB1:
S
384
P
PB1:
K
386
R
PB1:
D
398
E
PB1:
K
433
R
PB1:
I
435
T
PB1:
V
587
T
PB1:
D
618
E
PB1:
N
642
S
PB1:
V
728
I
PB1:
K
737
R
PB2
PB2:
R
54
K
PB2:
K
61
R
PB2:
G
225
S
PB2:
A
274
S
PB2:
Q
288
K
PB2:
I
315
M
PB2:
E
391
D
PB2:
E
396
D
PB2:
S
453
T
PB2:
N
456
S
PB2:
V
560
L
PB2:
M
575
L
PB2:
V
667
I
PB2:
E
677
D
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
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