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Influenza A/H1N1pdm
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GS_00H3PQ7.1
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USA/GS_00H3PQ7.1/2025-12-20
M. Aufderhar,
K. Franzen,
M. L. Killian,
K. Lantz,
T. Stuber,
J. Hicks &
S. Lakin
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
Submission details
Submission ID
PZ009943.1.seg1/PZ009944.1.seg2/PZ009945.1.seg3/PZ009946.1.seg4/PZ009947.1.seg5/PZ009948.1.seg6/PZ009949.1.seg7/PZ009950.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-22 05:55:43 UTC
Date released
2026-02-22 05:57:24 UTC
INSDC
Bioproject accession
PRJNA1207547
Biosample accession
SAMN54680928
INSDC accession seg1
PZ009943.1
INSDC accession seg2
PZ009944.1
INSDC accession seg3
PZ009945.1
INSDC accession seg4
PZ009946.1
INSDC accession seg5
PZ009947.1
INSDC accession seg6
PZ009948.1
INSDC accession seg7
PZ009949.1
INSDC accession seg8
PZ009950.1
NCBI release date
2026-02-17
SRA run accession
SRR36856025
Clade
Clade NA
A
Sample details
Collection country
USA
Collection subdivision level 1
VA
Collection date
2025-12-20
Isolate name
A/Green-winged Teal/VA/25G06558-003-original/2025
Host
Host
Anas carolinensis
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
267
Length seg2
2274 (100%)
Total SNPs seg2
315
Length seg3
2151 (100%)
Total SNPs seg3
217
Length seg5
1497 (100%)
Total SNPs seg5
253
Length seg6
1410 (98.4%)
Total deleted nucs seg6
9
Total inserted nucs seg6
9
Total SNPs seg6
228
Length seg7
982 (100%)
Total SNPs seg7
92
Length seg8
838 (97.1%)
Total SNPs seg8
134
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
G
21
A
seg1:
G
36
A
seg1:
C
42
T
seg1:
T
48
C
seg1:
C
60
G
seg1:
T
63
C
seg1:
G
66
A
seg1:
G
75
T
seg1:
T
81
C
seg1:
A
108
G
seg1:
A
111
G
seg1:
A
117
G
seg1:
G
144
A
seg1:
G
161
A
seg1:
C
165
T
seg1:
C
180
T
seg1:
A
184
C
seg1:
C
195
A
Show more
seg2
seg2:
C
19
T
seg2:
C
28
T
seg2:
A
30
G
seg2:
A
34
G
seg2:
G
42
A
seg2:
C
51
T
seg2:
A
63
G
seg2:
T
69
G
seg2:
T
75
C
seg2:
C
114
T
seg2:
A
129
T
seg2:
C
141
T
seg2:
C
147
T
seg2:
G
156
A
seg2:
A
159
G
seg2:
G
162
A
seg2:
G
168
A
seg2:
A
175
T
Show more
seg3
seg3:
R
53
A
seg3:
T
105
C
seg3:
A
120
T
seg3:
T
132
C
seg3:
C
162
T
seg3:
C
165
T
seg3:
T
174
C
seg3:
A
189
G
seg3:
T
198
C
seg3:
C
201
T
seg3:
G
204
A
seg3:
C
211
T
seg3:
T
214
C
seg3:
C
222
T
seg3:
C
250
A
seg3:
T
254
C
seg3:
C
255
A
seg3:
G
273
A
Show more
seg5
seg5:
A
27
C
seg5:
G
42
A
seg5:
G
54
A
seg5:
G
61
A
seg5:
A
69
T
seg5:
C
87
T
seg5:
A
97
G
seg5:
T
102
C
seg5:
C
123
A
seg5:
A
126
G
seg5:
A
138
G
seg5:
C
141
T
seg5:
T
156
C
seg5:
T
159
A
seg5:
A
162
G
seg5:
C
163
A
seg5:
A
165
G
seg5:
A
168
G
Show more
seg6
seg6:
C
20
T
seg6:
C
35
T
seg6:
T
38
C
seg6:
T
41
G
seg6:
T
44
A
seg6:
T
50
C
seg6:
A
54
G
seg6:
C
55
T
seg6:
T
78
C
seg6:
C
116
T
seg6:
T
127
C
seg6:
T
134
C
seg6:
A
137
G
seg6:
G
139
A
seg6:
G
143
C
seg6:
A
144
C
seg6:
T
145
C
seg6:
T
146
A
Show more
seg7
seg7:
T
36
C
seg7:
A
43
G
seg7:
G
75
A
seg7:
G
84
T
seg7:
A
88
G
seg7:
G
89
A
seg7:
C
93
G
seg7:
A
102
G
seg7:
G
105
A
seg7:
A
111
C
seg7:
T
123
G
seg7:
A
132
G
seg7:
T
154
C
seg7:
A
174
G
seg7:
A
252
T
seg7:
C
267
T
seg7:
G
270
A
seg7:
C
276
T
Show more
seg8
seg8:
C
6
T
seg8:
C
15
T
seg8:
A
16
G
seg8:
T
39
C
seg8:
C
42
T
seg8:
A
52
G
seg8:
G
60
A
seg8:
A
73
C
seg8:
T
75
A
seg8:
G
77
A
seg8:
T
79
C
seg8:
T
102
C
seg8:
C
108
T
seg8:
A
120
G
seg8:
T
127
C
seg8:
A
131
G
seg8:
A
132
G
seg8:
A
143
G
Show more
Deletions
seg6:64-72
Insertions
ins_seg6:77:AGTCTGGTG
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
M1
M1:
I
15
V
M1:
S
30
D
M1:
K
101
R
M1:
S
116
A
M1:
A
142
V
M1:
A
166
V
M1:
N
207
S
M1:
T
209
A
M1:
H
214
Q
M2
M2:
S
13
N
M2:
E
14
G
M2:
R
18
K
M2:
N
31
S
M2:
T
43
L
M2:
F
55
L
M2:
Q
77
R
NA
NA:
T
16
V
NA:
T
19
I
NA:
A
20
I
NA:
N
21
S
NA:
I
23
V
NA:
I
40
T
NA:
S
44
N
NA:
Q
45
H
NA:
I
46
P
NA:
K
51
Q
NA:
F
66
Y
NA:
V
67
I
NA:
S
74
L
NA:
A
75
I
NA:
R
77
E
NA:
S
79
A
NA:
A
81
D
NA:
S
82
P
Show more
NEP
NEP:
M
6
V
NEP:
V
32
I
NEP:
R
34
Q
NEP:
I
40
L
NEP:
T
48
A
NEP:
Y
57
S
NEP:
S
60
N
NEP:
E
63
G
NEP:
G
70
S
NEP:
M
83
V
NEP:
A
89
I
NEP:
A
115
T
NP
NP:
D
21
N
NP:
I
33
V
NP:
D
53
E
NP:
V
100
R
NP:
X
114
E
NP:
V
119
I
NP:
L
122
Q
NP:
I
136
L
NP:
I
189
M
NP:
A
190
V
NP:
V
217
I
NP:
H
289
Y
NP:
K
305
R
NP:
V
313
F
NP:
M
316
I
NP:
K
350
T
NP:
K
351
R
NP:
I
353
V
Show more
NS1
NS1:
M
6
V
NS1:
I
18
V
NS1:
N
25
Q
NS1:
G
26
E
NS1:
K
44
R
NS1:
N
48
S
NS1:
L
59
R
NS1:
V
60
A
NS1:
W
67
R
NS1:
K
70
E
NS1:
S
74
D
NS1:
T
76
A
NS1:
R
78
K
NS1:
T
86
A
NS1:
S
91
T
NS1:
R
108
K
NS1:
I
111
V
NS1:
I
112
A
Show more
PA
PA:
X
18
E
PA:
I
85
T
PA:
S
186
G
PA:
K
204
R
PA:
K
213
R
PA:
P
224
S
PA:
K
256
R
PA:
R
262
K
PA:
R
269
K
PA:
L
275
P
PA:
H
277
S
PA:
V
323
I
PA:
M
336
L
PA:
I
348
L
PA:
R
356
K
PA:
R
362
K
PA:
D
382
E
PA:
V
407
I
Show more
PA-X
PA-X:
X
18
E
PA-X:
I
85
T
PA-X:
S
186
G
PA-X:
N
204
D
PA-X:
R
206
K
PA-X:
L
207
S
PA-X:
L
210
P
PA-X:
S
213
G
PA-X:
*
233
W
PB1
PB1:
I
12
V
PB1:
T
59
S
PB1:
N
175
D
PB1:
I
179
M
PB1:
G
216
S
PB1:
I
298
L
PB1:
I
336
V
PB1:
M
339
I
PB1:
R
361
S
PB1:
I
364
L
PB1:
K
386
R
PB1:
K
430
R
PB1:
I
435
T
PB1:
K
486
R
PB1:
V
517
I
PB1:
D
581
E
PB1:
Q
584
R
PB1:
V
587
A
Show more
PB2
PB2:
R
54
K
PB2:
D
65
E
PB2:
T
147
I
PB2:
A
184
T
PB2:
G
225
S
PB2:
A
271
T
PB2:
V
292
I
PB2:
D
309
N
PB2:
I
315
M
PB2:
S
453
P
PB2:
L
464
M
PB2:
I
559
T
PB2:
T
588
A
PB2:
S
590
G
PB2:
R
591
Q
PB2:
L
645
M
PB2:
S
684
A
Deletions
None
Insertions
None
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