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GS_00H3NFT.1
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USA/GS_00H3NFT.1/2025-12-29
M. Aufderhar,
K. Franzen,
M. L. Killian,
K. Lantz,
T. Stuber,
J. Hicks &
S. Lakin
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
Submission details
Submission ID
PZ010135.1.seg1/PZ010136.1.seg2/PZ010137.1.seg3/PZ010138.1.seg4/PZ010139.1.seg5/PZ010140.1.seg6/PZ010141.1.seg7/PZ010142.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-22 05:48:50 UTC
Date released
2026-02-22 05:51:34 UTC
INSDC
Bioproject accession
PRJNA980729
Biosample accession
SAMN54680705
INSDC accession seg1
PZ010135.1
INSDC accession seg2
PZ010136.1
INSDC accession seg3
PZ010137.1
INSDC accession seg4
PZ010138.1
INSDC accession seg5
PZ010139.1
INSDC accession seg6
PZ010140.1
INSDC accession seg7
PZ010141.1
INSDC accession seg8
PZ010142.1
NCBI release date
2026-02-17
SRA run accession
SRR36855807
Clade
Clade
2.3.4.4b
Sample details
Collection country
USA
Collection subdivision level 1
KS
Collection date
2025-12-29
Isolate name
A/Pheasant/KS/26G00030-001-original/2025
Host
Host
Phasianinae
INSDC seg4
Subtype seg4
H5
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
366
Length seg2
2274 (97.1%)
Total SNPs seg2
212
Length seg3
2151 (96.3%)
Total SNPs seg3
242
Length seg4
1704 (97%)
Total deleted nucs seg4
3
Total SNPs seg4
175
Length seg5
1497 (95.7%)
Total SNPs seg5
176
Length seg6
1410 (96.7%)
Total SNPs seg6
214
Length seg7
982 (95.6%)
Total SNPs seg7
60
Length seg8
838 (96.9%)
Frame shifts seg8
NS1:23-26(nt:80-92)
Total deleted nucs seg8
2
Total frame shifts seg8
1
Total inserted nucs seg8
2
Total SNPs seg8
245
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
seg1:
A
33
G
seg1:
A
48
G
seg1:
G
63
A
seg1:
C
69
T
seg1:
A
90
C
seg1:
G
102
T
seg1:
T
105
C
seg1:
T
108
C
seg1:
A
126
G
seg1:
A
141
G
seg1:
G
147
A
seg1:
T
159
A
seg1:
A
165
G
seg1:
T
192
C
seg1:
A
211
C
seg1:
G
222
A
seg1:
T
228
C
seg1:
G
243
A
Show more
seg2
seg2:
G
66
A
seg2:
A
70
G
seg2:
T
75
C
seg2:
T
96
C
seg2:
A
129
G
seg2:
C
141
A
seg2:
T
171
C
seg2:
A
177
G
seg2:
G
183
A
seg2:
G
195
A
seg2:
G
204
A
seg2:
C
216
T
seg2:
T
225
C
seg2:
G
228
A
seg2:
A
237
G
seg2:
T
252
C
seg2:
T
255
C
seg2:
G
258
A
Show more
seg3
seg3:
G
39
A
seg3:
T
63
C
seg3:
C
114
T
seg3:
G
120
T
seg3:
A
126
G
seg3:
T
129
C
seg3:
C
132
T
seg3:
G
144
T
seg3:
C
147
T
seg3:
A
150
G
seg3:
A
171
G
seg3:
C
180
T
seg3:
C
206
T
seg3:
A
213
G
seg3:
C
228
A
seg3:
T
235
C
seg3:
T
238
C
seg3:
A
243
G
Show more
seg4
seg4:
G
27
A
seg4:
A
30
C
seg4:
G
36
A
seg4:
G
52
A
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
A
67
G
seg4:
C
102
T
seg4:
G
105
A
seg4:
A
123
G
seg4:
T
141
C
seg4:
T
144
C
seg4:
G
174
A
seg4:
T
183
C
seg4:
C
195
T
seg4:
A
207
G
seg4:
C
219
G
Show more
seg5
seg5:
G
57
A
seg5:
T
72
C
seg5:
G
81
A
seg5:
G
91
A
seg5:
A
96
G
seg5:
T
111
C
seg5:
G
117
A
seg5:
T
147
C
seg5:
A
150
G
seg5:
T
153
C
seg5:
G
159
A
seg5:
T
162
C
seg5:
T
165
C
seg5:
A
183
G
seg5:
C
195
T
seg5:
C
198
T
seg5:
T
201
C
seg5:
A
207
G
Show more
seg6
seg6:
G
35
A
seg6:
C
47
T
seg6:
T
50
C
seg6:
A
53
G
seg6:
T
62
C
seg6:
G
69
A
seg6:
G
74
A
seg6:
T
80
A
seg6:
C
83
T
seg6:
T
84
C
seg6:
A
87
G
seg6:
T
90
C
seg6:
G
101
A
seg6:
C
122
T
seg6:
G
137
A
seg6:
A
140
T
seg6:
G
143
A
seg6:
T
146
C
Show more
seg7
seg7:
A
76
G
seg7:
G
112
A
seg7:
C
142
T
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
seg7:
A
322
G
seg7:
A
327
G
seg7:
G
331
A
seg7:
C
332
T
seg7:
A
337
G
Show more
seg8
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
seg8:
G
74
A
Show more
Deletions
seg4:1054-1056, seg8:90, seg8:93
Insertions
ins_seg8:79:TG
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
V
11
I
HA:
S
16
G
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
H
154
Q
HA:
R
156
A
Show more
M1
M1:
K
101
R
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
A
227
T
M1:
K
230
R
M1:
N
232
D
M1:
K
242
N
M1:
M
248
L
M2
M2:
N
13
T
M2:
E
14
G
M2:
K
18
N
M2:
V
28
I
M2:
I
51
V
NA
NA:
V
17
I
NA:
M
23
V
NA:
H
44
N
NA:
Q
45
H
NA:
A
46
P
NA:
P
48
T
NA:
I
53
V
NA:
V
67
I
NA:
F
74
L
NA:
L
75
I
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
D
NA:
S
82
P
NA:
T
84
A
NA:
V
99
I
NA:
H
100
Y
NA:
H
155
Y
Show more
NP
NP:
G
16
S
NP:
V
105
M
NP:
M
136
L
NP:
A
353
V
NP:
M
374
V
NP:
S
450
N
NP:
S
451
A
NS1
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
C
28
G
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
T
NS1:
M
59
R
NS1:
E
60
A
NS1:
K
63
Q
NS1:
D
67
R
NS1:
K
70
E
Show more
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
E
36
K
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
E
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
PA
PA:
T
61
I
PA:
I
63
M
PA:
F
105
L
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
N
222
D
PA:
K
228
N
PA:
R
269
K
PA:
I
322
V
PA:
V
323
I
PA:
I
348
L
PA:
R
361
K
PA:
S
388
G
PA:
R
391
K
PA:
K
399
E
PA:
S
421
I
PA:
V
432
I
Show more
PAX
PAX:
T
61
I
PAX:
I
63
M
PAX:
F
105
L
PAX:
T
129
I
PAX:
R
195
K
PAX:
G
209
E
PAX:
L
210
P
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
P
PB1
PB1:
N
16
D
PB1:
E
96
D
PB1:
K
134
N
PB1:
G
154
S
PB1:
E
172
D
PB1:
G
177
E
PB1:
I
182
T
PB1:
K
207
R
PB1:
T
296
A
PB1:
S
375
N
PB1:
R
430
K
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
P
598
L
Show more
PB2
PB2:
I
176
T
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
A
471
T
PB2:
V
478
I
PB2:
Q
508
R
PB2:
M
575
I
PB2:
S
579
P
PB2:
S
590
G
PB2:
P
628
Q
PB2:
D
680
G
PB2:
R
699
K
PB2:
M
727
G
PB2:
F
741
S
Deletions
HA:344, NS1:27
Insertions
None
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