GS_00H2NNE.1

USA/GS_00H2NNE.1/2026-01-27
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ019808.1.seg3/PZ019804.1.seg4/PZ019807.1.seg5/PZ019806.1.seg6/PZ019805.1.seg7
Submitting group
Date submitted
2026-02-22 04:15:55 UTC
Date released
2026-02-22 04:16:21 UTC

INSDC

Bioproject accession
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
NCBI release date
2026-02-19

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-01-27
Isolate name
B/Washington/GKISBBBH52759/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg3
2291 (100%)
Total inserted nucs seg3
46
Total SNPs seg3
50
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
55
Length seg5
1829 (100%)
Total inserted nucs seg5
79
Total SNPs seg5
30
Length seg6
1529 (100%)
Total inserted nucs seg6
128
Total SNPs seg6
34
Length seg7
1160 (100%)
Total inserted nucs seg7
13
Total SNPs seg7
16

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • seg3:T111C
  • seg3:C117T
  • seg3:C216T
  • seg3:T339C
  • seg3:A411G
  • seg3:G414A
  • seg3:T423C
  • seg3:A525C
  • seg3:G549A
  • seg3:A618G
  • seg3:T654C
  • seg3:A665G
  • seg3:A771G
  • seg3:A789G
  • seg3:C813T
  • seg3:G867A
  • seg3:C897T
  • seg3:C928T

    • seg4

  • seg4:C111T
  • seg4:T159C
  • seg4:C252A
  • seg4:C270T
  • seg4:G297A
  • seg4:A302G
  • seg4:G312T
  • seg4:A318G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T

    • seg5

  • seg5:C3T
  • seg5:T9C
  • seg5:T46C
  • seg5:A55G
  • seg5:C178T
  • seg5:A224G
  • seg5:G244T
  • seg5:T298C
  • seg5:C313T
  • seg5:G361A
  • seg5:A373G
  • seg5:C380T
  • seg5:A454G
  • seg5:C523T
  • seg5:C608T
  • seg5:A634G
  • seg5:A763G
  • seg5:C841T

    • seg6

  • seg6:T9C
  • seg6:C125A
  • seg6:T134C
  • seg6:G194A
  • seg6:T212C
  • seg6:C309T
  • seg6:A358G
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:C534T
  • seg6:A639G
  • seg6:A660C
  • seg6:T714A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:C146T
  • seg7:G316A
  • seg7:A419G
  • seg7:G482A
  • seg7:G500T
  • seg7:G521A
  • seg7:G536A
  • seg7:A566G
  • seg7:C656T
  • seg7:A919G
  • seg7:A967G
  • seg7:T1086C
    • Deletions
    seg4:562-570
    Insertions
    ins_seg3:0:GCGTTTGATTTGTCATA, ins_seg3:2241:AGAAAC, ins_seg3:2245:ATCAAAAATGCTCGTGTTTCTAC, ins_seg5:0:ATTTTCTTGTGAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATACAAAAAATGCTGTTGTTTCTAC, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT, ins_seg7:0:GCACTTTCTTA, ins_seg7:1147:AA

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:K75R
  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

    • M1

  • M1:T15I
  • M1:R105K

    • NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

    • NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

    • PA

  • PA:N222S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V
    • Deletions
    HA1:162-164
    Insertions
    None