GS_00H2NMG.1

USA/GS_00H2NMG.1/2026-01-06
E. B. Fox, J. M. Garrigues & N. M. Green

Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories

Submission details

Submission ID
PZ005896.1
Submitting group
Date submitted
2026-02-22 04:09:45 UTC
Date released
2026-02-22 04:10:40 UTC

Clade & Lineage

Clade
3III_B.3.2

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-01-06
Isolate name
hDenV3/USA/CA-LACPHL-DA00084/2026

Host

Host

INSDC

INSDC accession
NCBI release date
2026-02-18
NCBI update date
2026-02-18

Alignment and QC

Length
10603 (99%)
Total ambiguous nucs
1
Total deleted nucs
2
Total inserted nucs
3
Total SNPs
455
Total unknown nucs
2

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • G65A
  • C203T
  • T235C
  • T250C
  • C256T
  • T262C
  • A265G
  • C289T
  • T295C
  • G322T
  • C334T
  • C358T
  • C383A
  • A451G
  • C469G
  • T496G
  • T556C
  • G565A
    • Deletions
    74, 75
    Insertions
    ins_10437:ACC

    Amino acid mutations

    Mutations called relative to the NC_001475.2 reference

    Substitutions

    2K

  • 2K:L17M
  • 2K:T20I

    • C

  • C:Q97K

    • E

  • E:V158I
  • E:A219T
  • E:I380T
  • E:E404A

    • NS1

  • NS1:I71V
  • NS1:L94I
  • NS1:L178M
  • NS1:T233S
  • NS1:S290N

    • NS2A

  • NS2A:L23M
  • NS2A:F38L
  • NS2A:V127I
  • NS2A:V150I
  • NS2A:M186L

    • NS2B

  • NS2B:P57A

    • NS3

  • NS3:F31L
  • NS3:E43D
  • NS3:T112M
  • NS3:T176M
  • NS3:D392E

    • NS4A

  • NS4A:D36H
  • NS4A:V100I

    • NS4B

  • NS4B:I115V
  • NS4B:M151I
  • NS4B:S157P
  • NS4B:F160Y
  • NS4B:K241R

    • NS5

  • NS5:V72I
  • NS5:T188A
  • NS5:V234I
  • NS5:A372V
  • NS5:E429D
  • NS5:I553T
  • NS5:Q562L
  • NS5:L603V
  • NS5:T629S
  • NS5:L639P
  • NS5:E820D
  • NS5:V830I
  • NS5:P864S
    • Deletions
    None
    Insertions
    None