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GS_00H0MKR.1
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Download FASTA
Download metadata TSV
Switzerland/GS_00H0MKR.1/2025-12-29
M. Wyler &
C. Bachofen
Department of Infectious Diseases and Pathobiology, Institute of Virology and Immunology
Submission details
Submission ID
PX980741.1.seg1/PX980740.1.seg2/PX980739.1.seg3/PX980734.1.seg4/PX980737.1.seg5/PX980736.1.seg6/PX980735.1.seg7/PX980738.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-14 06:03:31 UTC
Date released
2026-02-14 06:04:33 UTC
Clade
Clade
2.3.4.4b
Sample details
Collection country
Switzerland
Collection subdivision level 1
Schlatt
Collection date
2025-12-29
Isolate name
A/Cygnus olor/Schlatt/V0623/2025
Host
Host
Cygnus olor
INSDC
INSDC accession seg1
PX980741.1
INSDC accession seg2
PX980740.1
INSDC accession seg3
PX980739.1
INSDC accession seg4
PX980734.1
INSDC accession seg5
PX980737.1
INSDC accession seg6
PX980736.1
INSDC accession seg7
PX980735.1
INSDC accession seg8
PX980738.1
NCBI release date
2026-02-10
INSDC seg4
Subtype seg4
H5
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
284
Length seg2
2274 (97.1%)
Total SNPs seg2
205
Length seg3
2151 (96.3%)
Total SNPs seg3
164
Length seg4
1704 (97%)
Total deleted nucs seg4
3
Total SNPs seg4
186
Length seg5
1497 (95.7%)
Total SNPs seg5
94
Length seg6
1413 (96.7%)
Total inserted nucs seg6
3
Total SNPs seg6
146
Length seg7
982 (95.6%)
Total SNPs seg7
69
Length seg8
838 (96.9%)
Total SNPs seg8
245
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
seg1:
A
33
G
seg1:
C
55
T
seg1:
A
57
G
seg1:
C
69
T
seg1:
C
85
T
seg1:
A
87
G
seg1:
T
105
C
seg1:
C
120
A
seg1:
A
126
G
seg1:
A
144
G
seg1:
T
159
C
seg1:
A
165
G
seg1:
A
195
T
seg1:
C
198
T
seg1:
G
210
A
seg1:
T
228
C
seg1:
A
249
T
seg1:
A
252
G
Show more
seg2
seg2:
A
54
G
seg2:
A
150
T
seg2:
T
171
C
seg2:
G
195
A
seg2:
T
207
C
seg2:
G
228
A
seg2:
C
241
T
seg2:
T
252
C
seg2:
T
255
C
seg2:
G
258
A
seg2:
G
261
A
seg2:
T
264
C
seg2:
G
267
A
seg2:
T
285
C
seg2:
A
288
G
seg2:
G
342
T
seg2:
T
363
C
seg2:
T
384
C
Show more
seg3
seg3:
G
81
A
seg3:
A
93
G
seg3:
G
120
A
seg3:
G
144
A
seg3:
A
171
G
seg3:
T
186
C
seg3:
G
195
A
seg3:
A
211
G
seg3:
C
228
G
seg3:
C
246
T
seg3:
G
249
A
seg3:
T
252
C
seg3:
A
255
G
seg3:
C
261
T
seg3:
G
270
A
seg3:
A
279
T
seg3:
T
324
C
seg3:
T
333
C
Show more
seg4
seg4:
A
30
C
seg4:
G
36
A
seg4:
T
45
C
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
C
102
T
seg4:
A
123
G
seg4:
G
174
A
seg4:
A
177
G
seg4:
T
183
C
seg4:
C
195
T
seg4:
C
199
T
seg4:
A
207
G
seg4:
C
219
G
seg4:
G
225
A
seg4:
G
227
A
seg4:
A
228
G
Show more
seg5
seg5:
G
57
A
seg5:
A
96
G
seg5:
A
99
G
seg5:
T
111
C
seg5:
A
135
G
seg5:
A
150
G
seg5:
T
165
C
seg5:
A
183
G
seg5:
T
216
C
seg5:
C
279
T
seg5:
A
312
G
seg5:
T
327
C
seg5:
C
333
T
seg5:
C
336
T
seg5:
A
342
G
seg5:
C
348
T
seg5:
A
351
G
seg5:
G
358
A
Show more
seg6
seg6:
G
35
A
seg6:
A
37
G
seg6:
T
49
C
seg6:
G
66
A
seg6:
G
69
A
seg6:
T
90
C
seg6:
A
92
G
seg6:
C
122
T
seg6:
T
125
C
seg6:
T
134
C
seg6:
G
137
A
seg6:
A
149
G
seg6:
C
150
T
seg6:
A
155
G
seg6:
G
156
C
seg6:
T
179
C
seg6:
T
182
C
seg6:
T
185
C
Show more
seg7
seg7:
C
46
T
seg7:
A
76
G
seg7:
G
112
A
seg7:
A
127
G
seg7:
C
142
T
seg7:
C
188
A
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
A
277
G
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
seg7:
A
322
G
Show more
seg8
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
G
74
A
seg8:
T
76
G
Show more
Deletions
seg4:1054-1056
Insertions
ins_seg6:1319:AAG
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
A
99
D
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
L
120
M
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
P
152
S
HA:
H
154
Q
Show more
M1
M1:
L
55
M
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
K
12
R
M2:
E
14
G
M2:
K
18
N
M2:
C
19
Y
M2:
D
21
G
M2:
V
28
I
M2:
I
51
V
M2:
S
82
N
NA
NA:
K
6
R
NA:
I
10
T
NA:
V
16
I
NA:
V
17
I
NA:
H
44
Y
NA:
A
46
P
NA:
F
74
C
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
I
94
V
NA:
V
99
I
NA:
H
100
Y
NA:
I
106
V
NA:
H
155
Y
NA:
T
188
I
NA:
M
258
I
NA:
T
289
M
Show more
NP
NP:
V
105
M
NP:
A
234
S
NP:
A
353
V
NP:
N
395
T
NP:
S
451
A
NS1
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
S
23
A
NS1:
M
24
D
NS1:
R
25
Q
NS1:
D
26
E
NS1:
M
27
L
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
A
NS1:
M
59
R
Show more
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
R
37
S
NS2:
I
40
L
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
E
NS2:
E
68
Q
NS2:
S
70
G
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
NS2:
I
86
R
Show more
PA
PA:
I
63
V
PA:
K
104
T
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
K
228
N
PA:
E
237
K
PA:
R
361
K
PA:
K
399
E
PA:
P
400
S
PA:
V
432
I
PA:
L
504
I
PA:
R
536
K
PA:
R
544
E
PA:
E
553
A
PA:
P
585
L
PA:
F
586
L
PA:
I
621
V
Show more
PAX
PAX:
I
63
V
PAX:
K
104
T
PAX:
T
129
I
PAX:
S
193
N
PAX:
G
209
E
PAX:
L
210
P
PAX:
S
219
Y
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
Q
PB1
PB1:
K
134
N
PB1:
M
171
I
PB1:
E
172
D
PB1:
G
177
E
PB1:
I
182
T
PB1:
M
195
V
PB1:
K
197
R
PB1:
S
216
N
PB1:
S
375
N
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
E
581
D
PB1:
P
598
L
PB1:
A
609
V
Show more
PB2
PB2:
H
110
Y
PB2:
I
292
V
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
L
464
M
PB2:
A
471
T
PB2:
Q
508
R
PB2:
S
579
P
PB2:
S
590
G
PB2:
P
628
Q
PB2:
R
699
K
PB2:
I
726
V
PB2:
M
727
G
PB2:
F
741
S
Deletions
HA:344
Insertions
ins_NA:434:N
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