GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
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Influenza B/Victoria
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GS_00H0LY0.1
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USA/GS_00H0LY0.1/2026-01-14
R. S. Cox,
G. Goodwin,
J. Freeman,
G. Godfrey &
D. Hook
South Carolina Dept. of Public Health, South Carolina Dept. of Public Health
Submission details
Submission ID
PX971239.1.seg2/PX971236.1.seg4/PX971237.1.seg6/PX971238.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-14 05:15:16 UTC
Date released
2026-02-14 05:15:55 UTC
INSDC
Bioproject accession
PRJNA1419796
Biosample accession
SAMN55197581
INSDC accession seg2
PX971239.1
INSDC accession seg4
PX971236.1
INSDC accession seg6
PX971237.1
INSDC accession seg8
PX971238.1
NCBI release date
2026-02-06
SRA run accession
SRR37144192
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Sample details
Collection country
USA
Collection subdivision level 1
South Carolina
Collection date
2026-01-14
Isolate name
B/South Carolina/SCPHL-FLU26-0019/2026
Host
Host
Homo sapiens
INSDC seg4
Lineage seg4
vic
Alignment and QC
Length seg2
2313 (98.1%)
Total SNPs seg2
53
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
30
Length seg8
1027 (96.3%)
Total SNPs seg8
17
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg2
seg2:
G
12
A
seg2:
G
39
A
seg2:
A
54
G
seg2:
G
81
A
seg2:
T
171
C
seg2:
T
174
C
seg2:
T
240
C
seg2:
T
300
A
seg2:
T
330
C
seg2:
C
342
T
seg2:
A
405
G
seg2:
G
441
A
seg2:
G
447
A
seg2:
G
510
A
seg2:
C
513
T
seg2:
A
576
G
seg2:
A
594
G
seg2:
A
705
G
Show more
seg4
seg4:
G
39
A
seg4:
C
188
T
seg4:
C
252
A
seg4:
C
270
T
seg4:
C
276
A
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
A
435
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
T
456
C
seg4:
G
457
A
seg4:
A
462
T
seg4:
A
484
G
Show more
seg6
seg6:
T
9
C
seg6:
C
125
A
seg6:
T
134
C
seg6:
T
212
C
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
C
534
T
seg6:
A
660
C
seg6:
T
714
A
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
seg6:
A
945
G
seg6:
C
954
T
seg6:
C
987
T
Show more
seg8
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
355
C
seg8:
G
376
A
seg8:
T
391
C
seg8:
C
419
T
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
T
775
C
seg8:
C
882
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
ins_seg6:0:ATGAACA
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
K
203
R
HA1:
P
241
Q
HA1:
R
279
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
N
NA:
V
401
I
NA:
K
404
R
NEP
NEP:
L
30
S
NEP:
S
93
P
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
PB2
PB2:
X
303
I
PB2:
I
492
T
PB2:
X
582
E
Deletions
HA1:162-164
Insertions
None
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