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GS_00H09NX.1
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Display Name: Slovakia/GS_00H09NX.1/2026-01-12
T. Sladecek
Sample details
Collection date (lower bound)
2026-01-12
Collection date (upper bound)
2026-01-12
Collection country
Slovakia
Collection date
2026-01-12
Submission details
Submission ID
OZ408315.1.seg1/OZ408314.1.seg2/OZ408319.1.seg3/OZ408312.1.seg4/OZ408316.1.seg5/OZ408313.1.seg6/OZ408318.1.seg7/OZ408317.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-14 04:22:43 UTC
Date released
2026-02-14 04:24:48 UTC
Authors
Author affiliations
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA121107385
INSDC accession seg1
OZ408315.1
INSDC accession seg2
OZ408314.1
INSDC accession seg3
OZ408319.1
INSDC accession seg4
OZ408312.1
INSDC accession seg5
OZ408316.1
INSDC accession seg6
OZ408313.1
INSDC accession seg7
OZ408318.1
INSDC accession seg8
OZ408317.1
NCBI release date
2026-02-05
SRA run accession
ERR16255768
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4.2
Alignment states and QC metrics seg1
Completeness seg1
90.86%
Length seg1
2138
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
93
Total unknown nucs seg1
11
Alignment states and QC metrics seg2
Completeness seg2
57.07%
Length seg2
2132
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
67
Total unknown nucs seg2
796
Alignment states and QC metrics seg3
Completeness seg3
79.80%
Length seg3
1894
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
74
Total unknown nucs seg3
112
Alignment states and QC metrics seg4
Completeness seg4
93.21%
Length seg4
1607
Total ambiguous nucs seg4
0
Total deleted nucs seg4
69
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
109
Total unknown nucs seg4
57
Alignment states and QC metrics seg5
Completeness seg5
93.10%
Length seg5
1458
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
51
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
91.99%
Length seg6
1321
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
71
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
90.75%
Length seg7
932
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
25
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
62.58%
Length seg8
668
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
18
Total unknown nucs seg8
111
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
C
192
T
seg1:
C
198
T
seg1:
T
255
C
seg1:
A
282
G
seg1:
C
289
A
seg1:
A
330
G
seg1:
A
336
G
seg1:
G
343
A
seg1:
G
347
A
seg1:
A
369
G
seg1:
G
375
A
seg1:
A
402
G
seg1:
T
417
C
seg1:
T
426
C
seg1:
T
438
C
seg1:
G
447
A
seg1:
C
453
T
seg1:
T
467
C
Show more
seg2
seg2:
A
135
G
seg2:
C
141
T
seg2:
T
171
C
seg2:
A
179
G
seg2:
G
180
A
seg2:
A
213
T
seg2:
A
219
G
seg2:
G
258
A
seg2:
G
294
A
seg2:
T
362
C
seg2:
A
372
G
seg2:
G
381
A
seg2:
C
399
T
seg2:
A
429
G
seg2:
T
432
C
seg2:
T
471
C
seg2:
C
487
T
seg2:
C
495
T
Show more
seg3
seg3:
A
324
T
seg3:
A
333
G
seg3:
C
340
T
seg3:
A
342
G
seg3:
A
345
G
seg3:
G
363
A
seg3:
T
369
C
seg3:
A
396
G
seg3:
A
435
G
seg3:
T
437
C
seg3:
C
450
A
seg3:
C
465
T
seg3:
C
468
T
seg3:
A
489
G
seg3:
A
497
G
seg3:
C
516
T
seg3:
A
522
G
seg3:
T
537
C
Show more
seg4
seg4:
C
77
T
seg4:
C
89
T
seg4:
G
155
A
seg4:
A
163
G
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
seg4:
G
213
A
seg4:
G
214
A
seg4:
G
222
A
seg4:
A
250
G
seg4:
A
251
G
seg4:
C
254
A
seg4:
A
275
G
seg4:
A
281
G
seg4:
T
296
C
seg4:
T
300
G
Show more
seg5
seg5:
G
96
A
seg5:
G
207
A
seg5:
C
216
T
seg5:
G
219
A
seg5:
C
249
T
seg5:
A
345
C
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
A
582
C
seg5:
G
606
A
Show more
seg6
seg6:
T
88
C
seg6:
T
96
C
seg6:
C
144
T
seg6:
A
179
G
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
seg6:
C
474
T
seg6:
A
492
G
Show more
seg7
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
208
T
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
G
328
A
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
T
566
C
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
Show more
seg8
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
A
442
G
seg8:
A
464
G
seg8:
T
513
C
seg8:
A
537
G
seg8:
C
579
T
Deletions
seg4:6-74
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
N
63
K
HA1:
F
79
V
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
Y
52
H
M2:
L
54
F
M2:
N
82
S
NA
NA:
E
59
G
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
PA
PA:
I
138
T
PA:
N
142
K
PA:
I
155
M
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
I
407
V
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
I
138
T
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
423
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
N
667
I
PB1-F2
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
Deletions
NA:463, NA:464
Insertions
None
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