GS_00GVYLN.1

Display Name: USA/GS_00GVYLN.1/2026-01-05
A. P. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. M. Plocik & D. Gratalo

Submission details

Submission ID
PX912469.1.seg2/PX912468.1.seg3/PX912465.1.seg4/PX912466.1.seg6/PX912467.1.seg8
Submitting group
Date submitted
2026-01-24 04:46:29 UTC
Date released
2026-01-24 04:47:10 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Alignment states and QC metrics seg2

Completeness seg2
100.00%
Length seg2
2381
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
23
Total SNPs seg2
47
Total unknown nucs seg2
0

Alignment states and QC metrics seg3

Completeness seg3
100.00%
Length seg3
2291
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
46
Total SNPs seg3
47
Total unknown nucs seg3
0

Alignment states and QC metrics seg4

Completeness seg4
98.57%
Length seg4
1849
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
51
Total unknown nucs seg4
0

Alignment states and QC metrics seg6

Completeness seg6
100.00%
Length seg6
1529
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
128
Total SNPs seg6
34
Total unknown nucs seg6
0

Alignment states and QC metrics seg8

Completeness seg8
99.62%
Length seg8
1083
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
21
Total SNPs seg8
23
Total unknown nucs seg8
0

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-01-05
Isolate name
B/New York/GKISBBBH49537/2026

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-01-23

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • seg2:G12A
  • seg2:A54G
  • seg2:G81A
  • seg2:T171C
  • seg2:T240C
  • seg2:T300A
  • seg2:T330C
  • seg2:C342T
  • seg2:A405G
  • seg2:G441A
  • seg2:G447A
  • seg2:C513T
  • seg2:A576G
  • seg2:T586C
  • seg2:A594G
  • seg2:A705G
  • seg2:A723G
  • seg2:G768A

    • seg3

  • seg3:T111C
  • seg3:C117T
  • seg3:T339C
  • seg3:G414A
  • seg3:T423C
  • seg3:C462T
  • seg3:G549A
  • seg3:A618G
  • seg3:T654C
  • seg3:A771G
  • seg3:C813T
  • seg3:G867A
  • seg3:G888A
  • seg3:C897T
  • seg3:A935G
  • seg3:G936A
  • seg3:A987G
  • seg3:C1006T

    • seg4

  • seg4:T159C
  • seg4:C252A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:C453T
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T
  • seg4:T510C

    • seg6

  • seg6:T9C
  • seg6:C125A
  • seg6:T155C
  • seg6:T212C
  • seg6:C318A
  • seg6:A358G
  • seg6:C394T
  • seg6:C399T
  • seg6:C429T
  • seg6:A504G
  • seg6:C519T
  • seg6:A576G
  • seg6:A660C
  • seg6:T714A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G
  • seg6:C954T

    • seg8

  • seg8:G6A
  • seg8:G26A
  • seg8:A112G
  • seg8:A118G
  • seg8:T163C
  • seg8:G190A
  • seg8:T341C
  • seg8:A352C
  • seg8:T391C
  • seg8:T400C
  • seg8:C419T
  • seg8:A426G
  • seg8:C604T
  • seg8:A610T
  • seg8:C632T
  • seg8:G661A
  • seg8:G685A
  • seg8:T775C
    • Deletions
    seg4:562-570
    Insertions
    ins_seg2:0:GTTTTC, ins_seg2:2358:AATGCTCGTGTTTCTAC, ins_seg3:0:GCATTTGATTTATCATA, ins_seg3:2241:AGAAAC, ins_seg3:2245:ATCAAAAATGCTCGTGTTTCTAC, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT, ins_seg8:1066:TAAAAATCCTCTTGTTACTAC

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

    • NA

  • NA:P42Q
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I
  • NA:E436K

    • NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

    • NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

    • PA

  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

    • PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
    • Deletions
    HA1:162-164
    Insertions
    None